API for strandCheckR
Calculate strandness information of a bam file
| Global functions | |
|---|---|
| calculateStrandCoverage | Man page Source code |
| calculateStrandNbReads | Man page Source code |
| checkPairedEnd | Man page Source code |
| concatenateAlignments | Man page Source code |
| filterDNA | Man page Source code |
| getWinFromBamFile | Man page Source code |
| getWinFromGranges | Man page Source code |
| getWinFromIRanges | Man page Source code |
| getWinFromReadInfo | Man page Source code |
| getWinInSequence | Source code |
| getWinOfAlignments | Man page Source code |
| intersectWithFeature | Man page Source code |
| keptProbaWin | Man page Source code |
| keptReadFragment | Man page Source code |
| plotHist | Man page Source code |
| plotWin | Man page Source code |
| sequenceInfoInPartition | Source code |
| strandCheckR | Man page |
| strandCheckR-package | Man page |
| summarizeHist | Man page Source code |
