Xiang: Arabidopsis embryo gene expression dataset from Xiang et al....

In supraHex: supraHex: a supra-hexagonal map for analysing tabular omics data

Description

Arabidopsis embryo dataset contains gene expression levels (3625 genes and 7 embryo samples) from Xiang et al. (2011). This dataset has been pre-processed: capping into floor of intensity 777.6; 2-base logarithmic transformation; row/gene centering; and keeping genes with at least 2-fold changes (in any stage) as compared to the average over embryo stages.

Usage

data(Xiang)

Value

• Xiang: a gene expression matrix of 3625 genes x 7 stage samples. These embryo stages are: zygote, quadrant, globular, heart, torpedo, bent, and mature.

References

Xiang et al. (2011) Genome-wide analysis reveals gene expression and metabolic network dynamics during embryo development in Arabidopsis. Plant Physiol, 156(1):346-356.

supraHex documentation built on Nov. 26, 2020, 2:01 a.m.