ComBat | Adjust for batch effects using an empirical Bayes framework |
ComBat_seq | Adjust for batch effects using an empirical Bayes framework... |
empirical.controls | A function for estimating the probability that each gene is... |
f.pvalue | A function for quickly calculating f statistic p-values for... |
fstats | A function for quickly calculating f statistics for use in... |
fsva | A function for performing frozen surrogate variable analysis... |
irwsva.build | A function for estimating surrogate variables by estimating... |
num.sv | A function for calculating the number of surrogate variables... |
psva | A function for estimating surrogate variables with the two... |
qsva | A function for computing quality surrogate variables (qSVs) |
read.degradation.matrix | A function for reading in coverage data from... |
ssva | A function for estimating surrogate variables using a... |
sva | sva: a package for removing artifacts from microarray and... |
sva.check | A function for post-hoc checking of an sva object to check... |
sva_network | A function to adjust gene expression data before network... |
svaseq | A function for estimating surrogate variables for count based... |
twostepsva.build | A function for estimating surrogate variables with the two... |
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