Description Usage Arguments Value Examples
This function computes quality surrogate variables (qSVs) from the library-size- and read-length-normalized degradation matrix for subsequent RNA quality correction
1 2 3 4 |
degradationMatrix |
the normalized degradation matrix, region by sample |
mod |
(Optional) statistical model used in DE analysis |
the qSV adjustment variables
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | ## Find files
bwPath <- system.file('extdata', 'bwtool', package = 'sva')
## Read the data
degCovAdj = read.degradation.matrix(
covFiles = list.files(bwPath,full.names=TRUE),
sampleNames = list.files(bwPath), readLength = 76,
totalMapped = rep(100e6,5),type="bwtool")
## Input data
head(degCovAdj)
## Results
qsva(degCovAdj)
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