API for switchBox
Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm
| Global functions | |
|---|---|
| KTSP.CalculateSignedScore | Source code |
| KTSP.Classify | Man page Source code |
| KTSP.Train | Man page Source code |
| KTSP.tiedRank | Source code |
| KbyMeasurement | Source code |
| KbyTtest | Source code |
| SWAP.Calculate.BasicTSPScores | Man page Source code |
| SWAP.Calculate.SignedTSPScores | Man page Source code |
| SWAP.CalculateScores | Man page Source code |
| SWAP.CalculateSignedScore | Man page Source code |
| SWAP.Check.Input | Source code |
| SWAP.Filter.Wilcoxon | Man page Source code |
| SWAP.Format.Input | Source code |
| SWAP.GetKFoldIndices | Source code |
| SWAP.GetKTSP.PredictionStats | Man page Source code |
| SWAP.GetKTSP.Result | Man page Source code |
| SWAP.GetKTSP.TrainTestResults | Man page Source code |
| SWAP.KTSP.CV | Man page Source code |
| SWAP.KTSP.Classify | Man page Source code |
| SWAP.KTSP.LOO | Man page Source code |
| SWAP.KTSP.Pairs.Disjoint | Source code |
| SWAP.KTSP.Statistics | Man page Source code |
| SWAP.KTSP.Train | Man page Source code |
| SWAP.KTSP.Train.Plain | Source code |
| SWAP.KTSP.Train.Plain.Ties | Source code |
| SWAP.KTSP.Train.Restricted | Source code |
| SWAP.KTSP.Train.Restricted.Ties | Source code |
| SWAP.Kby.Measurement | Man page Source code |
| SWAP.Kby.Ttest | Man page Source code |
| SWAP.MakeTSPTable | Man page Source code |
| SWAP.MakeTrainTestData | Source code |
| SWAP.PlotKTSP.GenePairBoxplot | Man page Source code |
| SWAP.PlotKTSP.GenePairClassesBoxplot | Man page Source code |
| SWAP.PlotKTSP.GenePairScatter | Man page Source code |
| SWAP.PlotKTSP.Genes | Man page Source code |
| SWAP.PlotKTSP.TrainTestROC | Man page Source code |
| SWAP.PlotKTSP.Votes | Man page Source code |
| SWAP.ScoreMatrixToVector | Source code |
| SWAP.ScoreVectorToMatrix | Source code |
| SWAP.Train.1TSP | Man page Source code |
| SWAP.Train.KTSP | Man page Source code |
| Train.1TSP | Source code |
| basicTSPScores | Source code |
| bestKByTtest | Source code |
| calculateScores | Source code |
| calculateSignedScore | Source code |
| calculate_tsp_instance | Source code |
| getPredictionStats | Source code |
| get_kfold_indices | Source code |
| getkTSPResult | Source code |
| getkTSPTrainTestResults | Source code |
| kTSPCV | Source code |
| kTSPLOO | Source code |
| makeTSPTable | Source code |
| make_train_test_data | Source code |
| matTesting | Man page |
| matTraining | Man page |
| plotGenePairBoxplot | Source code |
| plotGenePairClassesBoxplot | Source code |
| plotGenePairScatter | Source code |
| plotGenes | Source code |
| plotkTSPTrainTestROC | Source code |
| plotkTSPVotes | Source code |
| score_matrix_to_vector | Source code |
| score_vector_to_matrix | Source code |
| signedTSPScores | Source code |
| switchBox | Man page |
| switchBox-package | Man page |
| testingGroup | Man page |
| train1TSP | Source code |
| trainingGroup | Man page |
| trainkTSP | Source code |
