synapter: Label-free data analysis pipeline for optimal identification and quantitation

The synapter package provides functionality to reanalyse label-free proteomics data acquired on a Synapt G2 mass spectrometer. One or several runs, possibly processed with additional ion mobility separation to increase identification accuracy can be combined to other quantitation files to maximise identification and quantitation accuracy.

Package details

AuthorLaurent Gatto, Nick J. Bond, Pavel V. Shliaha and Sebastian Gibb.
Bioconductor views ImmunoOncology MassSpectrometry Proteomics QualityControl
MaintainerLaurent Gatto <> and Sebastian Gibb <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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synapter documentation built on Nov. 8, 2020, 6:25 p.m.