synapter: Label-free data analysis pipeline for optimal identification and quantitation

The synapter package provides functionality to reanalyse label-free proteomics data acquired on a Synapt G2 mass spectrometer. One or several runs, possibly processed with additional ion mobility separation to increase identification accuracy can be combined to other quantitation files to maximise identification and quantitation accuracy.

AuthorLaurent Gatto, Nick J. Bond and Pavel V. Shliaha and Sebastian Gibb.
Date of publicationNone
MaintainerLaurent Gatto <lg390@cam.ac.uk> and Sebastian Gibb <mail@sebastiangibb.de>
LicenseGPL-2
Version1.16.0
http://lgatto.github.com/synapter/

View on Bioconductor

Files in this package

synapter/DESCRIPTION
synapter/NAMESPACE
synapter/NEWS
synapter/R
synapter/R/AllClasses.R synapter/R/AllGenerics.R synapter/R/exported_tools.R synapter/R/fasta.R synapter/R/figures.R synapter/R/gui.R synapter/R/master.R synapter/R/synapter-class.R synapter/R/synapter-interface.R synapter/R/synergise.R synapter/R/utils.R synapter/R/zzz.R
synapter/build
synapter/build/vignette.rds
synapter/data
synapter/data/synapterTiny.rda
synapter/inst
synapter/inst/CITATION
synapter/inst/doc
synapter/inst/doc/synapter.R
synapter/inst/doc/synapter.Rnw
synapter/inst/doc/synapter.pdf
synapter/inst/extdata
synapter/inst/extdata/04_test_database.fasta
synapter/inst/extdata/synapter.css
synapter/inst/scripts
synapter/inst/scripts/run_test_report.R
synapter/man
synapter/man/MasterFdrResults-class.Rd synapter/man/MasterPeptides-class.Rd synapter/man/Synapter.Rd synapter/man/defunct.Rd synapter/man/estimateMasterFdr.Rd synapter/man/inspectPeptideScores.Rd synapter/man/makeMaster.Rd synapter/man/synapter-package.Rd synapter/man/synapterGuide.Rd synapter/man/synapterTinyData.Rd synapter/man/synergise.Rd
synapter/vignettes
synapter/vignettes/Figures
synapter/vignettes/Figures/GUI-Tab1.jpg
synapter/vignettes/Figures/GUI-Tab2.jpg
synapter/vignettes/Figures/GUI-Tab3.jpg
synapter/vignettes/Figures/PLGS_create_databank1.jpg
synapter/vignettes/Figures/PLGS_create_databank2.jpg
synapter/vignettes/Figures/PLGS_db_search_options.jpg
synapter/vignettes/Figures/PLGS_output_files1.jpg
synapter/vignettes/Figures/PLGS_output_files2.jpg
synapter/vignettes/Figures/PLGS_output_files3.jpg
synapter/vignettes/synapter.Rnw
synapter/vignettes/synapter.bib

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