Files in synapter
Label-free data analysis pipeline for optimal identification and quantitation

DESCRIPTION
NAMESPACE
NEWS
R
R/AllClasses.R R/AllGenerics.R R/MSnbase-extensions.R R/exported_tools.R R/fasta.R R/figures.R R/fragmentlibrary-functions.R R/fragmentmatching-functions.R R/fragments-functions.R R/gui.R R/master.R R/readcsv-functions.R R/requantify-functions.R R/spectrum-functions.R R/synapter-class.R R/synapter-interface.R R/synergise.R R/update.R R/utils.R R/zzz.R
build
build/vignette.rds
data
data/synapterTiny.rda
inst
inst/CITATION
inst/doc
inst/doc/Bugs.md inst/doc/Foreword.md inst/doc/fragmentmatching.R inst/doc/fragmentmatching.Rmd
inst/doc/fragmentmatching.html
inst/doc/synapter.R inst/doc/synapter.Rmd
inst/doc/synapter.html
inst/doc/synapter2.R inst/doc/synapter2.Rmd
inst/doc/synapter2.html
inst/extdata
inst/extdata/04_test_database.fasta
inst/extdata/synapter.css
inst/reports
inst/reports/scripts
inst/reports/scripts/synergise.R inst/reports/synergise1.Rmd inst/reports/synergise2.Rmd
inst/scripts
inst/scripts/run_test_report.R
man
man/MasterFdrResults-class.Rd man/MasterPeptides-class.Rd man/Synapter.Rd man/createUniquePeptideDbRds.Rd man/defunct.Rd man/estimateMasterFdr.Rd man/inspectPeptideScores.Rd man/makeMaster.Rd man/plotCrossMatching.Rd man/requantify.Rd man/rescaleForTop3.Rd man/synapter-package.Rd man/synapterGuide.Rd man/synapterPlgsAgreement.Rd man/synapterTinyData.Rd man/synergise.Rd man/synergise2.Rd
tests
tests/testthat
tests/testthat.R tests/testthat/test_MSnbase-extensions.R tests/testthat/test_fragmentlibrary-functions.R tests/testthat/test_fragments-functions.R tests/testthat/test_master-functions.R tests/testthat/test_readcsv-functions.R tests/testthat/test_requantify.R tests/testthat/test_spectrum-functions.R tests/testthat/test_utils.R
vignettes
vignettes/Bugs.md
vignettes/Dotfiles
vignettes/Dotfiles/synapter2workflow.dot
vignettes/Figures
vignettes/Figures/PLGS_create_databank1.jpg
vignettes/Figures/PLGS_create_databank2.jpg
vignettes/Figures/PLGS_db_search_options.jpg
vignettes/Figures/PLGS_output_files1.jpg
vignettes/Figures/PLGS_output_files2.jpg
vignettes/Figures/PLGS_output_files3.jpg
vignettes/Figures/synapter2workflow.png
vignettes/Foreword.md vignettes/fragmentmatching.Rmd vignettes/synapter.Rmd
vignettes/synapter.bib
vignettes/synapter2.Rmd
synapter documentation built on May 31, 2017, 3:47 p.m.