Man pages for synapter
Label-free data analysis pipeline for optimal identification and quantitation
| createUniquePeptideDbRds | Create an RDS file for the 'Unique Peptides Database' |
| defunct | synapter Deprecated and Defunct |
| estimateMasterFdr | Computes FDR for all possible final peptide combinations |
| inspectPeptideScores | Inspect peptide scores. |
| makeMaster | Merges final peptide files |
| MasterFdrResults-class | Class '"MasterFdrResults"' |
| MasterPeptides-class | Class '"MasterPeptides"' |
| plotCrossMatching | Plot fragment matching results. |
| requantify | Intensity requantification |
| rescaleForTop3 | Rescale for TOP3 |
| Synapter | Class "Synapter" |
| synapterGuide | Opens the 'synapter' vignette |
| synapter-package | Combine label-free data for optimal identification and... |
| synapterPlgsAgreement | Synapter/PLGS Agreement |
| synapterTinyData | Loads a small test data for the 'synapter' package |
| synergise | Synergise identification and quantitation results |
| synergise2 | Synergise identification and quantitation results |
