API for transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification

Global functions
.calculateProbs	Source code
.dissectTranscribedRegions	Source code
.estimateDensity	Source code
.estimateErrorRate	Source code
.estimateFpkm	Source code
.estimateProbCutoff	Source code
.plotPeakCoverage	Source code
.q1q2SeparatingLine	Source code
.readBam	Source code
.readPeaks	Source code
.rpkm	Source code
ChipDataSet	Man page
ChipDataSet-class	Man page
TranscriptionDataSet	Man page
TranscriptionDataSet-class	Man page
addFeature	Man page
addFeature,ChipDataSet-method	Man page
annot	Man page
annotateTranscripts	Man page
annotateTranscripts,TranscriptionDataSet,GRanges-method	Man page
breakTranscriptsByPeaks	Man page
breakTranscriptsByPeaks,TranscriptionDataSet,ChipDataSet-method	Man page
cds	Man page
constructCDS	Man page Source code
constructTDS	Man page Source code
detectTranscripts	Man page
detectTranscripts,TranscriptionDataSet-method	Man page
estimateBackground	Man page
estimateBackground,TranscriptionDataSet-method	Man page
estimateGapDistance	Man page
estimateGapDistance,TranscriptionDataSet,GRanges-method	Man page
evaluatePeaks	Source code
exportCoverage	Man page
exportCoverage,TranscriptionDataSet-method	Man page
getConfusionMatrix	Man page
getConfusionMatrix,ChipDataSet-method	Man page
getGenomicAnnot	Man page
getGenomicAnnot,ChipDataSet-method	Man page
getPeaks	Man page
getPeaks,ChipDataSet-method	Man page
getPredictorSignificance	Man page
getPredictorSignificance,ChipDataSet-method	Man page
getProbTreshold	Man page
getProbTreshold,ChipDataSet-method	Man page
getQuadProb	Man page
getQuadProb,ChipDataSet-method	Man page
getTestedGapDistances	Man page
getTestedGapDistances,TranscriptionDataSet-method	Man page
getTranscripts	Man page
getTranscripts,TranscriptionDataSet-method	Man page
peaksToBed	Man page
peaksToBed,ChipDataSet-method	Man page
plotErrorRate	Man page
plotErrorRate,TranscriptionDataSet-method	Man page
plotFeatures	Man page
plotFeatures,ChipDataSet-method	Man page
plotGenomicAnnot	Man page
plotGenomicAnnot,ChipDataSet-method	Man page
plotROC	Man page
plotROC,ChipDataSet-method	Man page
predictStrand	Man page
predictStrand,ChipDataSet,TranscriptionDataSet-method	Man page
predictTssOverlap	Man page
predictTssOverlap,ChipDataSet-method	Man page
show	Man page
show,ChipDataSet-method	Man page
show,TranscriptionDataSet-method	Man page
tds	Man page
transcriptsToBed	Man page
transcriptsToBed,GRanges-method	Man page

transcriptR documentation built on Nov. 8, 2020, 8:12 p.m.

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transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification

API for transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification

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transcriptR An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification

API for transcriptR An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification

R Package Documentation

Browse R Packages

We want your feedback!

transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification

API for transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification