Files in transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/annot.rda
data/datalist
data/tds.rda
data/cds.rda
R/ChipDataSet-methods.R
R/ChipDataSet-generics.R
R/TranscriptionDataSet-class.R
R/utils.R
R/ChipDataSet-class.R
R/TranscriptionDataSet-generics.R
R/TranscriptionDataSet-methods.R
R/show.R
vignettes/transcriptR.bib
vignettes/transcriptR.Rmd
vignettes/images/Average_RNAseq_signal_across_peak_region.png
vignettes/images/Peak_strandedness_prediction.png
vignettes/images/Gene_associated_peak_prediction.png
vignettes/images/Main_scheme.png
man/estimateBackground-methods.Rd
man/annotateTranscripts-methods.Rd
man/getProbTreshold-methods.Rd
man/plotROC-methods.Rd
man/exportCoverage-methods.Rd
man/plotErrorRate-methods.Rd
man/constructTDS.Rd
man/getConfusionMatrix-methods.Rd
man/getTranscripts-methods.Rd
man/estimateGapDistance-methods.Rd
man/annot.Rd
man/getGenomicAnnot-methods.Rd
man/predictTssOverlap-methods.Rd
man/getTestedGapDistances-methods.Rd
man/show.Rd
man/plotFeatures-methods.Rd
man/tds.Rd
man/breakTranscriptsByPeaks-methods.Rd
man/ChipDataSet-class.Rd
man/getPeaks-methods.Rd
man/cds.Rd
man/transcriptsToBed-methods.Rd
man/peaksToBed-methods.Rd
man/constructCDS.Rd
man/predictStrand-methods.Rd
man/TranscriptionDataSet-class.Rd
man/addFeature-methods.Rd
man/getQuadProb-methods.Rd
man/plotGenomicAnnot-methods.Rd
man/getPredictorSignificance-methods.Rd
man/detectTranscripts-methods.Rd
tests/testthat.R
tests/testthat/test-TranscriptionDataSet-methods.R
tests/testthat/test-objects.R
tests/testthat/test-ChipDataSet-methods.R
inst/doc/transcriptR.html
inst/doc/transcriptR.Rmd
inst/doc/transcriptR.R
inst/extdata/chip_reads.bam
inst/extdata/chip_reads.bam.bai
inst/extdata/peaks.txt
inst/extdata/rna_reads.bam.bai
inst/extdata/rna_reads.bam
