exportHighConfSub: Export high-confidence substitutions as BED track

In wavClusteR: Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data

Description

Export high-confidence substitutions as BED track, compatible with the UCSC genome browser

Usage

exportHighConfSub(highConfSub, filename = 'highConfSub.bed',
trackname = 'highConfSub', description = 'highConfSub')

Arguments

highConfSub	GRanges object containing high-confidence substitution sites as returned by the getHighConfSub function
filename	A character defining the BED file name. Default to "wavClusters.bed"
trackname	A character defining the track.name of the BED file. Default to "wavClusters"
description	A character defining the description of the BED file. Default to "wavClusters"

Value

A BED file of the exported GRanges object

Note

Substitutions are color coded according to their strand information (red for the plus strand, blue for the minus strand).

Author(s)

Federico Comoglio

See Also

getHighConfSub

wavClusteR documentation built on Nov. 8, 2020, 6:54 p.m.