API for waveTiling
Wavelet-Based Models for Tiling Array Transcriptome Analysis

Global functions
GenomeInfo	Man page
GenomeInfo-class	Man page
MapFilterProbe	Man page
MapFilterProbe-class	Man page
MapMar	Source code
MapMarImp	Source code
WaveMarEstVarJ	Source code
WaveTilingFeatureSet	Man page
WaveTilingFeatureSet-class	Man page
WfmFit	Man page
WfmFit-class	Man page
WfmFitCircadian	Man page
WfmFitCircadian-class	Man page
WfmFitCustom	Man page
WfmFitCustom-class	Man page
WfmFitFactor	Man page
WfmFitFactor-class	Man page
WfmFitTime	Man page
WfmFitTime-class	Man page
WfmInf	Man page
WfmInf-class	Man page
WfmInfCompare	Man page
WfmInfCompare-class	Man page
WfmInfCustom	Man page
WfmInfCustom-class	Man page
WfmInfEffects	Man page
WfmInfEffects-class	Man page
WfmInfMeans	Man page
WfmInfMeans-class	Man page
WfmInfOverallMean	Man page
WfmInfOverallMean-class	Man page
addPheno	Man page
addPheno,WaveTilingFeatureSet-method	Man page
bgCorrQn	Man page
bgCorrQn,WaveTilingFeatureSet-method	Man page
cel2TilingFeatureSet	Man page Source code
extractChrFromFasta	Source code
filterOverlap	Man page
filterOverlap,WaveTilingFeatureSet-method	Man page
getAlpha	Man page
getAlpha,WfmInf-method	Man page
getBetaWav	Man page
getBetaWav,WfmFit-method	Man page
getChromosome	Man page
getChromosome,MapFilterProbe-method	Man page
getChromosome,WfmFit-method	Man page
getDataOrigSpace	Man page
getDataOrigSpace,WfmFit-method	Man page
getDataWaveletSpace	Man page
getDataWaveletSpace,WfmFit-method	Man page
getDelta	Man page
getDelta,WfmInf-method	Man page
getDesignMatrix	Man page
getDesignMatrix,WfmFit-method	Man page
getEff	Man page
getEff,WfmInf-method	Man page
getF	Man page
getF,WfmFit-method	Man page
getFDR	Man page
getFDR,WfmInf-method	Man page
getFilteredIndices	Man page
getFilteredIndices,MapFilterProbe-method	Man page
getGenomeInfo	Man page
getGenomeInfo,WfmFit-method	Man page
getGenomeInfo,WfmInf-method	Man page
getGenomicRegions	Man page
getGenomicRegions,WfmInf-method	Man page
getGroupNames	Man page
getGroupNames,WaveTilingFeatureSet-method	Man page
getKj	Man page
getKj,WfmFit-method	Man page
getMaxPos	Man page
getMaxPos,WfmFit-method	Man page
getMinPos	Man page
getMinPos,WfmFit-method	Man page
getNoGroups	Man page
getNoGroups,WaveTilingFeatureSet-method	Man page
getNoLevels	Man page
getNoLevels,WfmFit-method	Man page
getNoProbes	Man page
getNoProbes,WfmFit-method	Man page
getNonAnnotatedRegions	Man page
getNonAnnotatedRegions,WfmFit,WfmInf-method	Man page
getPhenoInfo	Man page
getPhenoInfo,WfmFit-method	Man page
getPosition	Man page
getPosition,MapFilterProbe-method	Man page
getPrior	Man page
getPrior,WfmFit-method	Man page
getProbePosition	Man page
getProbePosition,WfmFit-method	Man page
getRegions	Man page
getRegions,WfmInf-method	Man page
getReplics	Man page
getReplics,WaveTilingFeatureSet-method	Man page
getSigGenes	Man page
getSigGenes,WfmFit,WfmInf-method	Man page
getSigProbes	Man page
getSigProbes,WfmInf-method	Man page
getSmoothPar	Man page
getSmoothPar,WfmFit-method	Man page
getStrand	Man page
getStrand,MapFilterProbe-method	Man page
getStrand,WfmFit-method	Man page
getTwoSided	Man page
getTwoSided,WfmInf-method	Man page
getVarBetaWav	Man page
getVarBetaWav,WfmFit-method	Man page
getVarEff	Man page
getVarEff,WfmInf-method	Man page
getVarEps	Man page
getVarEps,WfmFit-method	Man page
getVarF	Man page
getVarF,WfmFit-method	Man page
getWaveletFilter	Man page
getWaveletFilter,WfmFit-method	Man page
initialize,GenomeInfo-method	Man page
initialize,MapFilterProbe-method	Man page
initialize,WaveTilingFeatureSet-method	Man page
initialize,WfmFit-method	Man page
initialize,WfmFitCircadian-method	Man page
initialize,WfmFitCustom-method	Man page
initialize,WfmFitFactor-method	Man page
initialize,WfmFitTime-method	Man page
initialize,WfmInf-method	Man page
initialize,WfmInfCompare-method	Man page
initialize,WfmInfCustom-method	Man page
initialize,WfmInfEffects-method	Man page
initialize,WfmInfMeans-method	Man page
initialize,WfmInfOverallMean-method	Man page
makeContrasts	Man page Source code
makeDesign	Man page Source code
makeNewAnnotationTextOverlay	Source code
makeNewAnnotationTrack	Source code
makeNewTranscriptRectangleOverlay	Source code
normVec	Source code
plotWfm	Man page
plotWfm,WfmFit,WfmInf-method	Man page
pm2mm	Source code
pmStrand,WaveTilingFeatureSet-method	Man page
selectProbesFromFilterOverlap	Man page
selectProbesFromFilterOverlap,MapFilterProbe-method	Man page
selectProbesFromTilingFeatureSet	Man page
selectProbesFromTilingFeatureSet,WaveTilingFeatureSet-method	Man page
show,GenomeInfo-method	Man page
show,MapFilterProbe-method	Man page
show,WaveTilingFeatureSet-method	Man page
show,WfmFit-method	Man page
show,WfmFitCircadian-method	Man page
show,WfmFitCustom-method	Man page
show,WfmFitFactor-method	Man page
show,WfmFitTime-method	Man page
show,WfmInf-method	Man page
show,WfmInfCompare-method	Man page
show,WfmInfCustom-method	Man page
show,WfmInfEffects-method	Man page
show,WfmInfMeans-method	Man page
show,WfmInfOverallMean-method	Man page
wave.backtransform	Source code
wave.backtransformK	Source code
wave.transform	Source code
wfm.fit	Man page
wfm.fit,WaveTilingFeatureSet-method	Man page
wfm.inference	Man page
wfm.inference,WfmFit-method	Man page