Man pages for waveTiling
Wavelet-Based Models for Tiling Array Transcriptome Analysis
| addPheno | Add phenotypic info to 'WaveTilingFeatureSet' |
| bgCorrQn | Background correction and quantile normalization |
| cel2TilingFeatureSet | Read CEL-files to TilingFeatureSet |
| filterOverlap | function to filter probe sequence overlaps and remap probes |
| GenomeInfo-class | Class "genomeInfo" |
| getNonAnnotatedRegions | Get non-annotated regions |
| getSigGenes | Get significant genes |
| makeContrasts | Construct contrast matrix |
| makeDesign | Construct design matrix |
| MapFilterProbe-class | Class "MapFilterProbe" |
| plotWfm | plot model fit and genomic regions |
| selectProbesFromFilterOverlap | select probes from 'MapFilterProbe' object |
| selectProbesFromTilingFeatureSet | select probes from 'WaveTilingFeatureSet' object |
| WaveTilingFeatureSet-class | Class "WaveTilingFeatureSet" |
| wfm.fit | Fit Wfm model to trancriptome data |
| WfmFitCircadian-class | Class "WfmFitCircadian" |
| WfmFit-class | Class "WfmFit" |
| WfmFitCustom-class | Class "WfmFitCustom" |
| WfmFitFactor-class | Class "WfmFitFactor" |
| WfmFitTime-class | Class "WfmFitTime" |
| WfmInf-class | Class "WfmInf" |
| WfmInfCompare-class | Class "WfmInfCompare" |
| WfmInfCustom-class | Class "WfmInfCustom" |
| WfmInfEffects-class | Class "WfmInfEffects" |
| wfm.inference | Perform transcriptome analysis on fitted wavelet-based... |
| WfmInfMeans-class | Class "WfmInfMeans" |
| WfmInfOverallMean-class | Class "WfmInfOverallMean" |
