Description Usage Arguments Details Value Author(s) See Also
This method performs peak detection in mass spectrometry direct injection spectrum using a wavelet based algorithm.
1 2 | ## S4 method for signature 'xcmsRaw'
findPeaks.MSW(object, snthresh = 3, verbose.columns = FALSE, ...)
|
object |
The |
snthresh |
|
verbose.columns |
Logical whether additional peak meta data columns should be returned. |
... |
Additional parameters to be passed to the
|
This is a wrapper around the peak picker in Bioconductor's
MassSpecWavelet
package calling
peakDetectionCWT
and
tuneInPeakInfo
functions.
A matrix, each row representing an intentified peak, with columns:
m/z value of the peak at the centroid position.
Minimum m/z of the peak.
Maximum m/z of the peak.
Always -1
.
Always -1
.
Always -1
.
Integrated (original) intensity of the peak.
Maximum intensity of the peak.
Always NA
.
Maximum MSW-filter response of the peak.
Signal to noise ratio.
Joachim Kutzera, Steffen Neumann, Johannes Rainer
MSW
for the new user interface,
do_findPeaks_MSW
for the downstream analysis
function or peakDetectionCWT
from the
MassSpecWavelet
for details on the algorithm and additionally
supported parameters.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.