Description Arguments Details Value Methods See Also Examples
Create a report showing all aligned peaks.
object |
the |
filebase |
base file name to save report, |
... |
arguments passed down to |
This method handles creation of summary reports similar to
diffreport
. It returns a summary report that can
optionally be written out to a tab-separated file.
If a base file name is provided, the report (see Value section) will be saved to a tab separated file.
A data frame with the following columns:
mz |
median m/z of peaks in the group |
mzmin |
minimum m/z of peaks in the group |
mzmax |
maximum m/z of peaks in the group |
rt |
median retention time of peaks in the group |
rtmin |
minimum retention time of peaks in the group |
rtmax |
maximum retention time of peaks in the group |
npeaks |
number of peaks assigned to the group |
Sample Classes |
number samples from each sample class represented in the group |
... |
one column for every sample class |
Sample Names |
integrated intensity value for every sample |
... |
one column for every sample |
peakTable(object, filebase = character(), ...)
1 2 3 4 5 6 7 8 9 | ## Not run:
library(faahKO)
cdfpath <- system.file("cdf", package = "faahKO")
cdffiles <- list.files(cdfpath, recursive = TRUE, full.names = TRUE)
xs<-xcmsSet(cdf files)
xs<-group(xs)
peakTable(xs, filebase="peakList")
## End(Not run)
|
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