showError-xcmsSet-method: Extract processing errors

In xcms: LC-MS and GC-MS Data Analysis

Description

If peak detection is performed with findPeaks setting argument stopOnError = FALSE eventual errors during the process do not cause to stop the processing but are recorded inside of the resulting xcmsSet object. These errors can be accessed with the showError method.

Usage

## S4 method for signature 'xcmsSet'
showError(object, message. = TRUE, ...)

Arguments

object	An xcmsSet object.
message.	Logical indicating whether only the error message, or the error itself should be returned.
...	Additional arguments.

Value

A list of error messages (if message. = TRUE) or errors or an empty list if no errors are present.

Author(s)

Johannes Rainer

xcms documentation built on Nov. 8, 2020, 5:13 p.m.