Box Plots for Device

Description

Produce box-and-whisker plot(s) of the samples for the selected device.

Usage

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plotBoxplot(x,
            which   = "",
            size    = 0,
            transfo = log2,
            range   = 0,
            names   = "namepart",
            mar     = NULL,
            las     = 2,
            cex     = 1.0,
            dev     = "screen",
            outfile = "BoxPlot",
            w       = 800,
            h       = 540,
            ...) 

Arguments

x

object of class DataTreeSet or ExprTreeSet.

which

type of probes to be used, for details see validData.

size

length of sequence to be generated as subset.

transfo

a valid function to transform the data, usually log2, or 0.

range

determines how far the plot whiskers extend out from the box.

names

optional vector of sample names.

mar

plot margin.

las

style of axis labels.

cex

amount by which plotting text and symbols should be magnified.

dev

graphics device to plot to, i.e. one of “screen”, “jpeg”,“png”, “pdf” or “ps”.

outfile

the name of the output file.

w

the width of the device in pixels.

h

the height of the device in pixels.

...

optional arguments to be passed to boxplot.

Details

Produces a boxplot for slot data for an object of class DataTreeSet, ExprTreeSet or QualTreeSet for the selected graphics device.

Author(s)

Christian Stratowa

See Also

boxplot, plotBorder, plotNUSE, plotRLE

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