Box Plots of Normalized Unscaled Standard Errors (NUSE) for Device

Share:

Description

Produce boxplot of Normalized Unscaled Standard Errors (NUSE) for the set of arrays and the selected device.

Usage

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
plotNUSE(x,
         which    = "UnitName",
         size     = 0,
         range    = 0,
         names    = "namepart",
         main     = "NUSE Plot",
         ylim     = c(0.8,1.2),
         las      = 2,
         add.line = TRUE,
         outline  = FALSE,
         dev      = "screen",
         outfile  = "NUSEPlot",
         w        = 800,
         h        = 540,
         ...) 

Arguments

x

object of class ExprTreeSet or QualTreeSet.

which

type of probes to be used, for details see validData.

size

length of sequence to be generated as subset.

range

determines how far the plot whiskers extend out from the box.

names

optional vector of sample names.

main

the main title for the plot.

ylim

range for the plotted y values.

las

the style of axis labels.

add.line

logical, if TRUE a horizontal line is drawn.

outline

if outline is not true, the outliers are not drawn.

dev

graphics device to plot to, i.e. one of “screen”, “jpeg”,“png”, “pdf” or “ps”.

outfile

the name of the output file.

w

the width of the device in pixels.

h

the height of the device in pixels.

...

optional arguments to be passed to boxplot.

Details

Create boxplots of Normalized Unscaled Standard Errors (NUSE) for the set of arrays.

For names=NULL full column names of slot data will be displayed while for names="namepart" column names will be displayed without name extension. If names is a vector of column names, only these columns will displayed as boxplot.

Author(s)

Christian Stratowa

See Also

nuseplot

Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.