rawCELName-methods: Method for getting names of the raw CEL-files

In xps: Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays

Description

Method for getting names (and full path) of the original CEL-files.

Usage

rawCELName(object, treename = "*", fullpath = TRUE)

Arguments

object	object of class DataTreeSet.
treename	treename, for which the name of the original CEL-file should be returned.
fullpath	logical, if TRUE return full path.

Details

Since CEL-files can be imported with import.data using alternative celnames, method rawCELName allows to return the original name and optionally the full path for each CEL-file.

Value

A character vector.

Author(s)

Christian Stratowa

See Also

import.data

Examples

## load existing ROOT scheme file and ROOT data file
scheme.test3 <- root.scheme(paste(path.package("xps"),"schemes/SchemeTest3.root",sep="/"))
data.test3 <- root.data(scheme.test3, paste(path.package("xps"),"rootdata/DataTest3_cel.root",sep="/"))

rawCELName(data.test3)
rawCELName(data.test3, treename = "TestA2.cel", fullpath = FALSE)

xps documentation built on Nov. 8, 2020, 6 p.m.