Man pages for ABC.RAP
Array Based CpG Region Analysis Pipeline
| annotate_data | Annotating the filtered probes |
| annotation_file | annotation file for the 450k probes |
| CpG_hits | Identifying genes for which multiple CpG sites show... |
| delta_beta_data | Applying delta beta analysis to calculate the difference... |
| filter_data | Filtering DNA methylation 450k non_specific probes |
| nonspecific_probes | 450k DNA methylation non specific probes |
| overlap_data | Overlapping Student's t-test and delta beta results |
| plot_candidate_genes | Plotting highly different and significant probes annotated by... |
| plot_data | Overview description of the DNA methylation pattern for cases... |
| plot_gene | Plotting and exporting methylation profile for candidate... |
| process.ABC.RAP | An automated analysis applying all ABC.RAP functions in one... |
| test_data | test dataset of 450k DNA methylation |
| ttest_data | applying t-test analysis |
