CpG_hits: Identifying genes for which multiple CpG sites show...

In ABC.RAP: Array Based CpG Region Analysis Pipeline

Description

This function calculates the number of significantly different CpG sites between cases and controls for each gene and produces a frequency table with genes that have more than one CpG site.

Usage

CpG_hits(x)

Arguments

x	Results from the overlap_data function

Examples

data(test_data)
data(nonspecific_probes)
data(annotation_file)
test_data_filtered <- filter_data(test_data)
test_data_ttest <- ttest_data(test_data_filtered, 1, 2, 3, 4, 1e-3)
test_data_delta_beta <- delta_beta_data(test_data_filtered, 1, 2, 3, 4, 0.5, -0.5, 0.94, 0.06)
test_overlapped_data <- overlap_data(test_data_ttest, test_data_delta_beta)
test_CpG_hits <- CpG_hits(test_overlapped_data)

ABC.RAP documentation built on May 2, 2019, 9:16 a.m.