overlap_data: Overlapping Student's t-test and delta beta results

In ABC.RAP: Array Based CpG Region Analysis Pipeline

Description

This function overlaps the results from both Student<e2><80><99>s t-test and delta beta analyses to identify probes (CpG sites) that are highly and significantly different between cases and controls.

Usage

overlap_data(x, y)

Arguments

x	Results from t-test or delta beta analyses
y	Results from t-test or delta beta analyses

Examples

data(test_data)
data(nonspecific_probes)
data(annotation_file)
test_data_filtered <- filter_data(test_data)
test_data_ttest <- ttest_data(test_data_filtered, 1, 2, 3, 4, 1e-3)
test_data_delta_beta <- delta_beta_data(test_data_filtered, 1, 2, 3, 4, 0.5, -0.5, 0.94, 0.06)
test_overlapped_data <- overlap_data(test_data_ttest, test_data_delta_beta)

ABC.RAP documentation built on May 2, 2019, 9:16 a.m.