AFM
Atomic Force Microscope Image Analysis

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Functions
337
Source code
18
Man pages
121
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AFM: Atomic Force Microscope Image Analysis
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API

API for AFM
Atomic Force Microscope Image Analysis

Global functions
AFM Man page
AFMImage Man page Source code
AFMImage-class Man page
AFMImage3DModelAnalysis Man page
AFMImage3DModelAnalysis-class Man page
AFMImageAnalyser Man page Source code
AFMImageAnalyser-class Man page
AFMImageCollagenNetwork Man page
AFMImageFractalDimensionMethod Man page Source code
AFMImageFractalDimensionMethod-class Man page
AFMImageFractalDimensionsAnalysis Man page Source code
AFMImageFractalDimensionsAnalysis-class Man page
AFMImageGaussianMixAnalysis Man page Source code
AFMImageGaussianMixAnalysis-class Man page
AFMImageNetworksAnalysis Man page Source code
AFMImageNetworksAnalysis-class Man page
AFMImageOfAluminiumInterface Man page
AFMImageOfNormallyDistributedHeights Man page
AFMImageOfOnePeak Man page
AFMImageOfRegularPeaks Man page
AFMImagePSDAnalysis Man page Source code
AFMImagePSDAnalysis-class Man page
AFMImagePSDSlopesAnalysis Man page Source code
AFMImagePSDSlopesAnalysis-class Man page
AFMImageVariogramAnalysis Man page Source code
AFMImageVariogramAnalysis-class Man page
AFMImageVariogramModel Man page Source code
AFMImageVariogramModel-class Man page
AreNodesConnected Man page Source code
PSD1DAgainstFrequency Man page
PSD1DAgainstFrequency,AFMImage-method Man page
PSD2DAgainstFrequency Man page
PSD2DAgainstFrequency,AFMImage,AFMImagePSDAnalysis-method Man page
PSD2DAgainstFrequency,AFMImage-method Man page
RoughnessByLengthScale Man page
RoughnessByLengthScale,AFMImage-method Man page
addNode Man page Source code
analyse Man page Source code
calculate3DModel Man page
calculate3DModel,AFMImage-method Man page
calculate3DModel,AFMImage3DModelAnalysis-method Man page
calculateDirectionalVariograms Man page Source code
calculateGaussianMixture Man page Source code
calculateHolesCharacteristics Man page Source code
calculateIgraph Man page Source code
calculateNetworkParameters Man page Source code
calculateNetworkSkeleton Man page Source code
calculateNetworks Man page
calculateNetworks,AFMImage-method Man page
calculateNetworks,AFMImageNetworksAnalysis-method Man page
calculateOmnidirectionalVariogram Man page Source code
calculatePhysicalDistanceFromPath Man page Source code
calculateShortestPaths Man page Source code
calculateWavModelExpectedRange Source code
calculateWavModelExpectedSill Source code
canBeRemoved Man page Source code
checkIsotropy Man page Source code
checkNormality Man page Source code
checkNormalityDensity Source code
checkNormalityQQ Source code
createGraph Man page Source code
createReportDirectory Source code
densityCurvesAllHeights Man page
densityCurvesAllHeights,AFMImageGaussianMixAnalysis-method Man page
directionalVariograms Man page
directionalVariograms,AFMImageVariogramAnalysis-method Man page
displayColoredNetworkWithVerticesSize Man page Source code
displayHolesIn3D Man page Source code
displayIn3D Man page Source code
displaygridIgraphPlot Man page Source code
displaygridIgraphPlotFromEdges Man page Source code
dnormalmix Man page Source code
eachComponentsCounts Man page
eachComponentsCounts,AFMImageGaussianMixAnalysis-method Man page
epsilonGaussianMix Man page
epsilonGaussianMix,AFMImageGaussianMixAnalysis-method Man page
evaluateVariogramModels Man page
evaluateVariogramModels,AFMImageVariogramAnalysis-method Man page
existsEdge Man page Source code
existsSegment Man page Source code
export3DImageForReport Source code Source code
exportFractalDimImagesForReport Source code
exportPSDImagesForReport Source code
exportToSTL Man page Source code
exportVariogramImagesForReport Source code
extractAFMImage Man page Source code
filterAFMImage Man page Source code
fractalDimensionMethods Man page
fractalDimensionMethods,AFMImageFractalDimensionsAnalysis-method Man page
fusionCloseNodes Man page Source code
gaussianMix Man page
gaussianMix,AFMImageGaussianMixAnalysis-method Man page
generateAFMImageReport Man page Source code
generateCheckReport Man page Source code
generatePolygonEnvelope Man page Source code
generateReport Man page Source code
generateReportFromNanoscopeImageDirectory Man page Source code
get3DImageFullfilename Man page Source code
getAFMImageFromKrige Source code
getAFMImageFromMatrix Source code
getAllPointsToRemove Man page Source code
getAngle Man page Source code
getAutoIntersectionForOmnidirectionalVariogram Man page Source code
getAutoIntersectionForRoughnessAgainstLengthscale Man page Source code
getAutomaticWidthForVariogramCalculation Man page Source code
getBresenham2DSegment Man page Source code
getCircleSpatialPoints Man page Source code
getCoordinatesFromVertexId Man page Source code
getCutsOfSpplotFromAFMImage Source code
getDTModelEvaluation Man page
getDTModelEvaluation,AFMImageVariogramAnalysis-method Man page
getDTModelSillRange Man page
getDTModelSillRange,AFMImageVariogramAnalysis-method Man page
getDirectionalVarioCsvFullfilename Source code
getDirectionalVarioPngFullfilename Source code
getFractalDimensions Man page Source code
getFractalDimensionsPngFullfilename Source code
getGaussianMix Source code
getGgplotFromDataTable Source code Source code
getHolesStatistics Man page Source code
getHorizontalSlice Source code
getIntersectionForRoughnessAgainstLengthscale Man page Source code
getIntersectionPointWithBorder Man page Source code
getLibrariesVersions Source code
getListOfDiameters Man page Source code
getLogLogOmnidirectionalSlopeGraph Man page Source code
getMaxCircleMatrix Man page Source code
getNetworkGridLayout Man page Source code
getNetworkParameters Man page
getNetworkParameters,AFMImage-method Man page
getNetworkParameters,AFMImageNetworksAnalysis-method Man page
getNyquistSpatialFrequency Man page
getNyquistSpatialFrequency,AFMImage-method Man page
getOmnidirectionalVarioCsvFullfilename Source code
getOmnidirectionalVarioPngFullfilename Source code
getPaddedAFMImage Man page Source code
getRoughnessAgainstLengthscale Source code
getRoughnessAgainstLengthscale10nm Source code
getRoughnessAgainstLengthscaleIntersection Source code
getRoughnessParameters Man page
getRoughnessParameters,AFMImage-method Man page
getSimplifiedRoughnessAgainstLenghscale Source code
getSpplotColors Source code
getSpplotFromAFMImage Man page Source code
getSpplotImagefullfilename Source code
getSpplotPredictedImageFullfilename Source code
getSurroundingVertexesList Man page Source code
getTopologyAFMImage Man page Source code
getTriangle Man page Source code
getVarioPngchosenFitSample Source code
getVertexId Man page Source code
gridIgraphPlot Man page Source code
identifyEdgesFromCircles Man page Source code
identifyIsolatedNodes Man page Source code
identifyMaxCircleRadius Man page Source code
identifyNodesAndEdges Man page Source code
identifyNodesWithCircles Man page Source code
importFromNanoscope Man page Source code
initialize,AFMImage-method Man page
initialize,AFMImageAnalyser-method Man page
initialize,AFMImageFractalDimensionMethod-method Man page
initialize,AFMImageFractalDimensionsAnalysis-method Man page
initialize,AFMImageGaussianMixAnalysis-method Man page
initialize,AFMImageNetworksAnalysis-method Man page
initialize,AFMImagePSDAnalysis-method Man page
initialize,AFMImagePSDSlopesAnalysis-method Man page
initialize,AFMImageVariogramAnalysis-method Man page
initialize,AFMImageVariogramModel-method Man page
initialize,omniVariogramSlopeAnalysis-method Man page
intersections Man page
intersections,AFMImagePSDAnalysis-method Man page
invertBinaryAFMImage Man page Source code
isAdjacentToBetterVertex Man page Source code
isAngleBetweenEdgesAlwaysSuperiorToMinAngle Man page Source code
isBinary Man page Source code
isReportDirectoryWritePermissionCorrect Source code
loglike.normalmix Man page Source code
makeBinaryAFMImage Man page Source code
maxGaussianMix Man page
maxGaussianMix,AFMImageGaussianMixAnalysis-method Man page
minGaussianMix Man page
minGaussianMix,AFMImageGaussianMixAnalysis-method Man page
multiplyHeightsAFMImage Man page Source code
mykrigefunction Source code
omniVariogramSlopeAnalysis Man page Source code
omniVariogramSlopeAnalysis-class Man page
omnidirectionalVariogram Man page
omnidirectionalVariogram,AFMImageVariogramAnalysis-method Man page
performAllPSDCalculation Man page Source code
performGaussianMixCalculation Man page Source code
pnormmix Man page Source code
printVariogramModelEvaluations Man page Source code
psd1d Man page
psd1d,AFMImagePSDAnalysis-method Man page
psd1d_breaks Man page
psd1d_breaks,AFMImagePSDAnalysis-method Man page
psd2d Man page
psd2d,AFMImagePSDAnalysis-method Man page
psd2d_maxHighLengthScale Man page
psd2d_maxHighLengthScale,AFMImagePSDAnalysis-method Man page
psd2d_truncHighLengthScale Man page
psd2d_truncHighLengthScale,AFMImagePSDAnalysis-method Man page
putAnalysisOnDisk Man page
putAnalysisOnDisk,AFMImageAnalyser-method Man page
putImagesFromAnalysisOnDisk Man page Source code
removeLonguestEdge Man page Source code
removeNode Man page Source code
roughnessAgainstLengthscale Man page
roughnessAgainstLengthscale,AFMImagePSDAnalysis-method Man page
runAFMApp Man page Source code
sampleAFMImage Man page Source code
saveHorizontalSlices Source code
saveOnDisk Man page Source code
saveOnDiskIntersectionForRoughnessAgainstLengthscale Man page Source code
saveSpplotFromAFMImage Man page Source code
saveSpplotFromKrige Source code
shiftFFT2D Man page Source code
shiftedPSDuv Man page Source code
simplifyAFMImage Man page Source code
simplifyNetwork Man page Source code
statsFromKrige Source code
summaryMixture Man page
summaryMixture,AFMImageGaussianMixAnalysis-method Man page
tcdfsEcdfsCheck Man page
tcdfsEcdfsCheck,AFMImageGaussianMixAnalysis-method Man page
thinImage Man page Source code
totalRMSRoughness Man page Source code
transformAFMImageForNetworkAnalysis Man page
transformAFMImageForNetworkAnalysis,AFMImage-method Man page
transformAFMImageForNetworkAnalysis,AFMImageNetworksAnalysis-met Man page
updateProgress Man page
updateProgress,AFMImageVariogramAnalysis-method Man page
variogramModels Man page
variogramModels,AFMImageVariogramAnalysis-method Man page
variogramSlopeAnalysis Man page
variogramSlopeAnalysis,AFMImageVariogramAnalysis-method Man page
AFM documentation built on Oct. 23, 2020, 5:23 p.m.

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