performAllPSDCalculation: Perform all the calculation for PSD exploitation

In AFM: Atomic Force Microscope Image Analysis

Description

performAllPSDCalculation perform all the calculation for PSD exploitation

Usage

performAllPSDCalculation(AFMImagePSDAnalysis, AFMImage)

Arguments

AFMImagePSDAnalysis	an AFMImagePSDAnalysis to manage and store the results of PSD analysis
AFMImage	an AFMImage from Atomic Force Microscopy

Author(s)

M.Beauvais

Examples

## Not run: 
library(AFM)

data(AFMImageOfNormallyDistributedHeights)

newAFMImage<-AFMImageOfNormallyDistributedHeights
newAFMImage@fullfilename<-"C:/Users/one/AFMImageOfNormallyDistributedHeights.txt"
psdAnalysis<-AFMImagePSDAnalysis()
# Create a closure to update progress
psdAnalysis@updateProgress<- function(value = NULL, detail = NULL, message = NULL) {
  if (exists("progressPSD")){
    if (!is.null(message)) {
      progressPSD$set(message = message, value = 0)
    }else{
      progressPSD$set(value = value, detail = detail)
    }
  }
}
psdAnalysis@psd1d_breaks<-2^3
psdAnalysis@psd2d_truncHighLengthScale<-TRUE
psdAnalysis<-performAllPSDCalculation(AFMImagePSDAnalysis= psdAnalysis, AFMImage= newAFMImage)
print("done psdAnalysis")

## End(Not run)

Example output

Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: unable to open X11 display
2: 'rgl_init' failed, running with rgl.useNULL = TRUE 
3: .onUnload failed in unloadNamespace() for 'rgl', details:
  call: fun(...)
  error: object 'rgl_quit' not found 
[1] "done psdAnalysis"

AFM documentation built on Oct. 23, 2020, 5:23 p.m.