Files in AMR

Antimicrobial Resistance Data Analysis

NEWS.md README.md R/g.test.R R/ggplot_sir.R R/amr_selectors.R R/custom_eucast_rules.R R/join_microorganisms.R R/av_from_text.R R/plotting.R R/translate.R R/mean_amr_distance.R R/mo_matching_score.R R/sir_calc.R R/mo_source.R R/eucast_rules.R R/random.R R/custom_mdro_guideline.R R/vctrs.R R/availability.R R/data.R R/disk.R R/aa_globals.R R/whocc.R R/aa_helper_pm_functions.R R/age.R R/first_isolate.R R/zz_deprecated.R R/av_property.R R/ab.R R/proportion.R R/skewness.R R/like.R R/aa_helper_functions.R R/av.R R/aa_amr-package.R R/aa_options.R R/ggplot_pca.R R/mdro.R R/atc_online.R R/export_biosample.R R/custom_microorganisms.R R/ab_property.R R/antibiogram.R R/sir.R R/mic.R R/top_n_microorganisms.R R/key_antimicrobials.R R/mo.R R/sir_df.R R/mo_property.R R/resistance_predict.R R/kurtosis.R R/bug_drug_combinations.R R/count.R R/zzz.R R/get_episode.R R/guess_ab_col.R R/pca.R R/custom_antimicrobials.R R/italicise_taxonomy.R R/ab_from_text.R inst/doc/AMR_for_Python.R inst/doc/welcome_to_AMR.R inst/doc/welcome_to_AMR.Rmd inst/doc/AMR_for_Python.Rmd tests/testthat.R tests/testthat/test-_deprecated.R tests/testthat/test-_misc.R tests/testthat/test-atc_online.R tests/testthat/test-vctrs.R tests/testthat/test-ab_property.R tests/testthat/test-mo_property.R tests/testthat/test-pca.R tests/testthat/test-amr_selectors.R tests/testthat/test-av_from_text.R tests/testthat/test-custom_microorganisms.R tests/testthat/test-random.R tests/testthat/test-custom_antimicrobials.R tests/testthat/test-zzz.R tests/testthat/test-antibiogram.R tests/testthat/test-skewness.R tests/testthat/test-mo.R tests/testthat/test-plotting.R tests/testthat/test-availability.R tests/testthat/test-eucast_rules.R tests/testthat/test-sir.R tests/testthat/test-guess_ab_col.R tests/testthat/test-top_n_microorganisms.R tests/testthat/test-count.R tests/testthat/test-italicise_taxonomy.R tests/testthat/test-data.R tests/testthat/test-age.R tests/testthat/test-av_property.R tests/testthat/test-mean_amr_distance.R tests/testthat/test-bug_drug_combinations.R tests/testthat/test-av.R tests/testthat/test-mic.R tests/testthat/test-kurtosis.R tests/testthat/test-ab.R tests/testthat/test-disk.R tests/testthat/test-key_antimicrobials.R tests/testthat/test-mdro.R tests/testthat/test-join_microorganisms.R tests/testthat/test-ab_from_text.R tests/testthat/test-ggplot_sir.R tests/testthat/test-g.test.R tests/testthat/test-translate.R tests/testthat/helper-functions.R tests/testthat/test-like.R tests/testthat/test-proportion.R tests/testthat/test-first_isolate.R tests/testthat/test-get_episode.R vignettes/welcome_to_AMR.Rmd vignettes/AMR_for_Python.Rmd man/g.test.Rd man/antibiogram.Rd man/as.sir.Rd man/microorganisms.codes.Rd man/atc_online.Rd man/top_n_microorganisms.Rd man/get_episode.Rd man/example_isolates_unclean.Rd man/key_antimicrobials.Rd man/mdro.Rd man/translate.Rd man/skewness.Rd man/microorganisms.Rd man/antimicrobial_selectors.Rd man/custom_eucast_rules.Rd man/join.Rd man/pca.Rd man/as.mic.Rd man/custom_mdro_guideline.Rd man/count.Rd man/AMR-options.Rd man/proportion.Rd man/WHONET.Rd man/first_isolate.Rd man/add_custom_microorganisms.Rd man/ggplot_sir.Rd man/age.Rd man/dosage.Rd man/av_property.Rd man/age_groups.Rd man/microorganisms.groups.Rd man/av_from_text.Rd man/resistance_predict.Rd man/ab_property.Rd man/antimicrobials.Rd man/example_isolates.Rd man/kurtosis.Rd man/AMR-deprecated.Rd man/mean_amr_distance.Rd man/AMR.Rd man/clinical_breakpoints.Rd man/bug_drug_combinations.Rd man/as.mo.Rd man/like.Rd man/intrinsic_resistant.Rd man/plot.Rd man/WHOCC.Rd man/ab_from_text.Rd man/as.ab.Rd man/eucast_rules.Rd man/random.Rd man/as.disk.Rd man/mo_source.Rd man/guess_ab_col.Rd man/availability.Rd man/mo_matching_score.Rd man/export_ncbi_biosample.Rd man/mo_property.Rd man/italicise_taxonomy.Rd man/add_custom_antimicrobials.Rd man/ggplot_pca.Rd man/as.av.Rd