NEWS.md

In ARUtools: Management and Processing of Autonomous Recording Unit (ARU) Data

ARUtools 0.7.1

Bugs

• clip_wave() was failing due to error in rlang evaulation in nse_names(). (#44)

ARUtools 0.7.0

New

• clean_metadata() now can detect time zone offsets in filenames and return a new column tz_offset (#27).
  • create_pattern_tz_offset() creates the pattern to look for the offset.
• Look around patterns added to create_pattern_XX functions (#6)
  • new function create_lookaround() helps create these patterns.
• Add internal environment for global variables and get_pattern(), add_pattern_aru_type(), and set_pattern() were added as helper functions.
• ARU type detection is improved and now includes manufacturer and type. New function guess_ARU_type() can be called on a path to guess the ARU type.

Update

• "job" package removed from clip_wav() ( #25 )
• Updates to clean_logs() (#28, #34)

Bugs

• Fix issue with no oversamples (GRTS fails from select_samples() if n is a data frame and all n_os are zero. #40)
• Fix to_lower() in check_names() causes error if upper cases used. #41

ARUtools 0.6.2

• Initial CRAN submission.

1st CRAN version! 🥳 Changes since 0.6.1 relate to getting package ready for CRAN submission and so included improved documentation, final coverage of tests, removing unnecessary functions.

• 36 tracks workflow to submission

• Removed play_random_track() (dd3ddb195fe50c37cb83a15110651c4c659014dd) #38
• Added examples to final functions and remove \dontrun where necessary (44879bd3508af743049f0c5528d386d9f56a8475)

ARUtools 0.6.0

New

• Cleaned up functions for recording selection, spectrograms, clipping waves, acoustic indices and creating dirs (#8, #11, #12, #13, #23)
• Added NSE for relevant functions, these now use col_COLNAME, changed arguments for non-NSE functions to name_COLNAME (#15)
• Ensure that data order is unchanged when passing through cleaning functions (#19)
• Added sampling vignette

Bugs

• Fixed bug calc_sun() corrupting date column (#18)

ARUtools 0.5.1

New

• add_wildtrax() - New helper function to create and append WildTrax file names

Bugs

• clean_gps() - Fixed errors when processing only GPX files

ARUtools 0.5.0

• clean_gps()
• can handle GPX files via sf now
• distance cutoff results in a warning (not an error), returning the data with the max_dist column, so users can see which site was problematic.
• now checks for distance by site groups aru_id and site_id by default
• pattern matches for GPS column headers have been expanded
• catches errors but continues reporting on failed loading (remove skip_bad argument)

• check_problems() now also checks GPS meta data

• create_pattern_XXX()

• Now accept multiple options
• all separators are non-optional, but provide "" as pseudo-optional

• create_pattern_site_id() ids do not have to have a suffix

• clean_metadata() accepts multiple pattern options

• clean_site_index() allows no date columns (col_date_time = NULL)

• add_sites()

• Rename dt_type to by_date
• Take mean of multiple sites with by_date = "date" (instead of truncating)

• Use by_date = NULL to skip joining by date range

• Workflow now works with sf input (must be POINT geometries)

• clean_site_index()
• add_sites()

• calc_sun()

• Timezones are now more explicit

• Expect local time marked with UTC
• Existing non-UTC timezones are stripped with a message

• Errors returned if there are more than one relevant date_time column with different timezones

• Vignettes

• Mini spatial workflow (vignettes/spatial.Rmd)
• Explaining timezones (vignettes/timezones.Rmd)

ARUtools 0.4.0.9000

• Major overhaul of first half of the workflow
• Main functions now
• clean_metadata()
• clean_gps() / clean_site_index()
• add_sites()
• calc_sun()
• Helper functions for checking, and for creating regex patterns

ARUtools documentation built on Oct. 9, 2024, 1:07 a.m.