beIDsToAllScopes: Find all BEID and ProbeID corresponding to a BE

In BED: Biological Entity Dictionary (BED)

Find all BEID and ProbeID corresponding to a BE

Description

Find all BEID and ProbeID corresponding to a BE

Usage

beIDsToAllScopes(
  beids,
  be,
  source,
  organism,
  entities = NULL,
  canonical_symbols = TRUE
)

Arguments

beids	a character vector of gene identifiers
be	one BE. Guessed if not provided
source	the source of gene identifiers. Guessed if not provided
organism	the gene organism. Guessed if not provided
entities	a numeric vector of gene entity. If NULL (default), beids, source and organism arguments are used to identify BEs. Be carefull when using entities as these identifiers are not stable.
canonical_symbols	return only canonical symbols (default: TRUE).

Value

A data.frame with the following fields:

• value: the identifier

• be: the type of BE

• source: the source of the identifier

• organism: the BE organism

• symbol: canonical symbol of the identifier

• BE_entity: the BE entity input

• BEID (optional): the BE ID input

• BE_source (optional): the BE source input

BED documentation built on March 7, 2023, 6:54 p.m.