dumpNcbiDb: Feeding BED: Dump tables from the NCBI gene DATA

In BED: Biological Entity Dictionary (BED)

Feeding BED: Dump tables from the NCBI gene DATA

Description

Not exported to avoid unintended modifications of the DB.

Usage

dumpNcbiDb(
  taxOfInt,
  reDumpThr,
  ddir,
  toLoad = c("gene_info", "gene2ensembl", "gene_group", "gene_orthologs", "gene_history",
    "gene2refseq"),
  env = parent.frame(n = 1),
  curDate
)

Arguments

taxOfInt	the organism to download (e.g. "9606").
reDumpThr	time difference threshold between 2 downloads
ddir	path to the directory where the data should be saved
toLoad	the list of tables to load
env	the R environment in which to load the tables when downloaded
curDate	current date as given by Sys.Date

BED documentation built on March 7, 2023, 6:54 p.m.