View source: R/getBeIdSymbolTable.R
getBeIdSymbolTable | R Documentation |
Get a table of biological entity (BE) identifiers and symbols
getBeIdSymbolTable( be, source, organism, restricted, entity = TRUE, verbose = FALSE, recache = FALSE, filter = NULL )
be |
one BE |
source |
the BE ID database |
organism |
organism name |
restricted |
boolean indicating if the results should be restricted to direct symbols |
entity |
boolean indicating if the technical ID of BE should be returned |
verbose |
boolean indicating if the CQL query should be displayed |
recache |
boolean indicating if the CQL query should be run even if the table is already in cache |
filter |
character vector on which to filter id. If NULL (default), the result is not filtered: all IDs are taken into account. |
a data.frame with the following fields:
id: the from BE ID
symbol: the BE symbol
canonical: true if the symbol is canonical for the direct BE ID
direct: false if the symbol is not directly associated to the BE ID
entity: (optional) the technical ID of to BE
getBeIdSymbols, getBeIdNameTable
## Not run: getBeIdSymbolTable( be="Gene", source="EntrezGene", organism="human" ) ## End(Not run)
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