getEnsemblPeptideIds: Feeding BED: Download Ensembl DB and load peptide information...

In BED: Biological Entity Dictionary (BED)

Feeding BED: Download Ensembl DB and load peptide information in BED

Description

Not exported to avoid unintended modifications of the DB.

Usage

getEnsemblPeptideIds(organism, release, gv, ddir, dbCref, canChromosomes)

Arguments

organism	character vector of 1 element corresponding to the organism of interest (e.g. "Homo sapiens")
release	the Ensembl release of interest (e.g. "83")
gv	the genome version (e.g. "38")
ddir	path to the directory where the data should be saved
dbCref	a named vector of characters providing cross-reference DB of interest. These DB are also used to find indirect ID associations.
canChromosomes	canonical chromosmomes to be considered as preferred ID (e.g. c(1:22, "X", "Y", "MT") for human)

BED documentation built on June 8, 2025, 10:18 a.m.