Man pages for BEDASSLE
Quantifies effects of geo/eco distance on genetic differentiation

BEDASSLE-internalInternal BEDASSLE Functions
BEDASSLE-packageDisentangling the contributions of geographic and ecological...
calculate.all.pairwise.FstCalculates unbiased pairwise Fst between all sampled...
calculate.pairwise.FstCalculates unbiased pairwise Fst between a pair of...
CovarianceThe parametric covariance matrix
HGDP.bedassle.dataThe Eurasian subset of the HGDP dataset used in example...
link.up.posteriorsLinks up multiple MCMC output objects
make.continuing.paramsGenerates an R object containing the last parameter values of...
MCMCRuns the Markov chain Monte Carlo with the standard...
MCMC_BBRuns the Markov chain Monte Carlo with the overdispersion...
mcmc.operatorsOperator parameters that control the operation of the MCMC
plot_acceptance_ratePlots the acceptance rate of a parameter across MCMC...
plot_all_acceptance_ratesPlots the acceptance rates of all parameters across MCMC...
plot_all_joint_marginalsPlots the joint marginals for all parameter pairs
plot_all_marginalsPlots the marginal densities for all parameters
plot_all_phi_marginalsPlot all the marginals for the phi parameters for all...
plot_all_phi_tracePlots all the trace plots for the phi parameters for all...
plot_all_tracePlots all the trace plots for all parameters
plot_joint_marginalPlots the joint marginal for a pair of parameters
plot_marginalPlots the marginal density of a parameter
plot_phi_marginalPlots the marginal for the phi parameter estimated in a...
plot_phi_tracePlots the trace plot for the phi parameter estimated in a...
plot_posterior_predictive_samplesPlots posterior predictive sampling
plot_tracePlot the trace plot for a parameter
posterior.predictive.sampleGenerates posterior predictive samples
BEDASSLE documentation built on May 29, 2017, 7:18 p.m.