Files in BEDASSLE
Quantifies Effects of Geo/Eco Distance on Genetic Differentiation
MD5
NAMESPACE
DESCRIPTION
R/BB_Prior_prob_phi.R
R/load_posterior_predictive_samples.R
R/Prior_prob_alpha2.R
R/Prior_prob_alphaE.R
R/posterior.predictive.sample.R
R/Prior_prob_mu.R
R/plot_all_phi_trace.R
R/plot_all_phi_marginals.R
R/Prior_prob_alphaD.R
R/plot_trace.R
R/plot_posterior_predictive_samples.R
R/BB_Update_phi.R
R/BB_Update_thetas.R
R/make.continuing.params.R
R/BB_Update_mu.R
R/Shift.R
R/Update_aE.R
R/Likelihood_thetas.R
R/MCMC_BB.R
R/plot_all_joint_marginals.R
R/Initialize.params.R
R/load_MCMC_output.R
R/plot_phi_trace.R
R/Update_thetas.R
R/plot_all_trace.R
R/Likelihood_counts.R
R/Covariance.R
R/identify_invariant_loci.R
R/Update_aD.R
R/Update_beta.R
R/plot_marginal.R
R/transform_frequencies.R
R/calculate.all.pairwise.Fst.R
R/Update_a0.R
R/plot_joint_marginal.R
R/plot_all_marginals.R
R/Prior_prob_alpha0.R
R/a0_gibbs_rate.R
R/plot_all_acceptance_rates.R
R/MCMC.R
R/plot_phi_marginal.R
R/Update_a2.R
R/Update_mu.R
R/simulate_allele_count_data.R
R/plot_acceptance_rate.R
R/link.up.posteriors.R
R/Prior_prob_beta.R
R/BB_Likelihood_counts.R
R/calculate.pairwise.Fst.R
data/HGDP.bedassle.data.rda
data/mcmc.operators.rda
man/plot_phi_marginal.Rd
man/plot_trace.Rd
man/plot_all_joint_marginals.Rd
man/plot_joint_marginal.Rd
man/HGDP.bedassle.data.Rd
man/plot_all_marginals.Rd
man/mcmc.operators.Rd
man/plot_all_phi_trace.Rd
man/plot_phi_trace.Rd
man/calculate.pairwise.Fst.Rd
man/plot_all_acceptance_rates.Rd
man/make.continuing.params.Rd
man/MCMC_BB.Rd
man/plot_all_phi_marginals.Rd
man/BEDASSLE-package.Rd
man/plot_acceptance_rate.Rd
man/plot_posterior_predictive_samples.Rd
man/link.up.posteriors.Rd
man/posterior.predictive.sample.Rd
man/plot_all_trace.Rd
man/Covariance.Rd
man/calculate.all.pairwise.Fst.Rd
man/BEDASSLE-internal.Rd
man/MCMC.Rd
man/plot_marginal.Rd
