API for BEDASSLE
Quantifies effects of geo/eco distance on genetic differentiation

Global functions
BB_Likelihood_counts Man page Source code
BB_Prior_prob_phi Man page Source code
BB_Update_mu Man page Source code
BB_Update_phi Man page Source code
BB_Update_thetas Man page Source code
BEDASSLE Man page
BEDASSLE-package Man page
Covariance Man page Source code
HGDP.bedassle.data Man page
Initialize.params Man page Source code
Likelihood_counts Man page Source code
Likelihood_thetas Man page Source code
MCMC Man page Source code
MCMC_BB Man page Source code
Prior_prob_alpha0 Man page Source code
Prior_prob_alpha2 Man page Source code
Prior_prob_alphaD Man page Source code
Prior_prob_alphaE Man page Source code
Prior_prob_beta Man page Source code
Prior_prob_mu Man page Source code
Shift Man page Source code
Update_a0 Man page Source code
Update_a2 Man page Source code
Update_aD Man page Source code
Update_aE Man page Source code
Update_beta Man page Source code
Update_mu Man page Source code
Update_thetas Man page Source code
a0_gibbs_rate Man page Source code
calculate.all.pairwise.Fst Man page Source code
calculate.pairwise.Fst Man page Source code
identify_invariant_loci Man page Source code
link.up.posteriors Man page Source code
load_MCMC_output Man page Source code
load_posterior_predictive_samples Man page Source code
make.continuing.params Man page Source code
mcmc.operators Man page
plot_acceptance_rate Man page Source code
plot_all_acceptance_rates Man page Source code
plot_all_joint_marginals Man page Source code
plot_all_marginals Man page Source code
plot_all_phi_marginals Man page Source code
plot_all_phi_trace Man page Source code
plot_all_trace Man page Source code
plot_joint_marginal Man page Source code
plot_marginal Man page Source code
plot_phi_marginal Man page Source code
plot_phi_trace Man page Source code
plot_posterior_predictive_samples Man page Source code
plot_trace Man page Source code
posterior.predictive.sample Man page Source code
simulate_allele_count_data Man page Source code
transform_frequencies Man page Source code
BEDASSLE documentation built on May 29, 2017, 7:18 p.m.