Nothing
`SCSnp` <-
function(x, ...){UseMethod("SCSnp")}
`SCSnp.default` <-
function(x, conf.level=0.95, alternative="two.sided", ...)
{
alternative <- match.arg(alternative, choices=c("two.sided","less","greater"))
DataMatrix <- x
N <- nrow(DataMatrix)
k <- round(conf.level*N,0)
RankDat <- apply(DataMatrix,2,rank)
switch(alternative,
"two.sided"={
W1 <- apply(RankDat,1,max)
W2 <- N + 1 - apply(RankDat,1,min)
Wmat <- cbind(W1,W2)
w <- apply(Wmat,1,max)
tstar <- round(sort(w)[k],0)
SCI <- function(x)
{
sortx <- sort(x)
cbind(sortx[N+1-tstar],sortx[tstar])
}
SCS <- t(apply(DataMatrix,2,SCI))
},
"less"={
W1 <- apply(RankDat,1,max)
tstar <- round(sort(W1)[k],0)
SCI <- function(x)
{
sortx <- sort(x)
cbind(-Inf, sortx[tstar])
}
SCS<-t(apply(DataMatrix,2,SCI))
},
"greater"={
W2 <- N + 1 - apply(RankDat,1,min)
tstar <- round(sort(W2)[k],0)
SCI <- function(x)
{
sortx <- sort(x)
cbind(sortx[N+1-tstar], Inf)
}
SCS<-t(apply(DataMatrix,2,SCI))
}
)
# end of switch
estimate<-apply(DataMatrix,2, median)
colnames(SCS)<-c("lower","upper")
out<-list(
conf.int=SCS,
estimate=estimate,
x=x,
k=k,
N=N,
conf.level=conf.level,
alternative=alternative)
class(out)<-"SCSnp"
return(out)
}
`SCSnp.CCRatio` <-
function(x,...)
{
args<-list(...)
args$x<-x$chains
out<-do.call("SCSnp.default", args)
out$x<-x
return(out)
}
`SCSnp.CCDiff` <-
function(x,...)
{
args<-list(...)
args$x<-x$chains
out<-do.call("SCSnp.default", args)
out$x<-x
return(out)
}
`SCSnp.bugs` <-
function(x, conf.level=0.95, alternative="two.sided", whichp=NULL, ...)
{
args<-list(...)
sl<-x$sims.list
if(is.null(whichp))
{
mat<-x$sims.matrix
}
else{
namsl<-names(sl)
if(!whichp %in% namsl)
{stop("whichp could not be found in the parameter list of the openbugs object")}
if(length(whichp)==1)
{
mat<-sl[[whichp]]
}
if(length(whichp)>1)
{
mat<-matrix(nrow=x$n.sims)
for (i in seq(along.with=whichp))
{
mat<-cbind(mat,x$sims.list[[whichp[i]]])
}
}
}
args$x<-mat
args$conf.level<-conf.level
args$alternative<-alternative
out<-do.call("SCSnp.default", args)
return(out)
}
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