BaySIC: Bayesian Analysis of Significantly Mutated Genes in Cancer

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This R package is the software implementation of the algorithm BaySIC, a Bayesian approach toward analysis of significantly mutated genes in cancer data.

Author
Nicholas B. Larson
Date of publication
2013-04-04 00:51:05
Maintainer
Nicholas B. Larson <larson.nicholas@mayo.edu>
License
GPL (>= 2)
Version
1.0

View on CRAN

Man pages

baysic.data
Organizes data for BaySIC functions
baysic.fit
Fits BaySIC BMR model
BaySIC-package
Bayesian Analysis of Significantly Mutated Genes in Cancer
baysic.test
BaySIC Evaluation of SMGs
BMR.plot
Visualize Sequence Context BMRs
ccds.18
CCDS Reference Data (Build hg18)
ccds.19
CCDS Reference Data (Build hg19)
example.dat
Example Mutation Data (Build hg19)
fn.cat
Collapses SNV and reference data into sequence mutation...
fuzzy.FDR.approx
Generate Approximate Fuzzy Rejection Probabilites
revcomp
DNA Reverse Complementation
write.baysic
Write BaySIC JAGS model files

Files in this package

BaySIC
BaySIC/MD5
BaySIC/R
BaySIC/R/BaySIC.R
BaySIC/NAMESPACE
BaySIC/man
BaySIC/man/write.baysic.Rd
BaySIC/man/revcomp.Rd
BaySIC/man/fuzzy.FDR.approx.Rd
BaySIC/man/fn.cat.Rd
BaySIC/man/example.dat.Rd
BaySIC/man/ccds.19.Rd
BaySIC/man/ccds.18.Rd
BaySIC/man/BMR.plot.Rd
BaySIC/man/baysic.test.Rd
BaySIC/man/baysic.fit.Rd
BaySIC/man/baysic.data.Rd
BaySIC/man/BaySIC-package.Rd
BaySIC/DESCRIPTION
BaySIC/data
BaySIC/data/example.dat.RData
BaySIC/data/datalist
BaySIC/data/ccds.19.RData
BaySIC/data/ccds.18.RData