Description Usage Format Details
An example simulated dataset in the input format used by BaySIC (MUT-style), consisting of observed somatic mutations for 200 subjects
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A dataframe object with 9882 observations on 7 variables
BaySIC utilizes a MUT-style format for input into its functions, which is a M\times7 dataframe where M is the number of observed mutations, and has the following structure:
chr
character string; chromosome (e.g.,"chr#","chrX","chrY")
start
integer; start basepair position
end
integer; end basepair position
id
character string; subject identification
type
character string; type of somatic mutation (e.g., "SNV", "INDEL")
gene
character string; corresponding gene of mutation
context
character string; sequence context (trinucleotide motif) of point mutation (NA
for INDEL)
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