example.dat: Example Mutation Data (Build hg19)

In BaySIC: Bayesian Analysis of Significantly Mutated Genes in Cancer

Description

An example simulated dataset in the input format used by BaySIC (MUT-style), consisting of observed somatic mutations for 200 subjects

Usage

data(example.dat)

Format

A dataframe object with 9882 observations on 7 variables

Details

BaySIC utilizes a MUT-style format for input into its functions, which is a M\times7 dataframe where M is the number of observed mutations, and has the following structure:

• chrcharacter string; chromosome (e.g.,"chr#","chrX","chrY")

• startinteger; start basepair position

• endinteger; end basepair position

• idcharacter string; subject identification

• typecharacter string; type of somatic mutation (e.g., "SNV", "INDEL")

• genecharacter string; corresponding gene of mutation

• contextcharacter string; sequence context (trinucleotide motif) of point mutation (NA for INDEL)

BaySIC documentation built on May 2, 2019, 10:29 a.m.