BMR.plot: Visualize Sequence Context BMRs

In BaySIC: Bayesian Analysis of Significantly Mutated Genes in Cancer

Description

Generates a heatmap of mutation rates by sequence context to assist in determining somatic point sequence context categories for BMR model

Usage

BMR.plot(dat.out)

Arguments

dat.out

output from baysic.data

Value

Generates a heatmap of point mutation rates by trinucleotide sequence context motif, which is corrected for values in ref.dat, on the log10 scale

Author(s)

Nicholas B. Larson

See Also

baysic.data

Examples

## Not run: 
data(example.dat)
data(ccds.19)
baysic.dat.ex<-baysic.data(example.dat,ccds.19)
BMR.plot(baysic.dat.ex)

## End(Not run)

Example output

Loading required package: rjags
Loading required package: coda
Linked to JAGS 4.2.0
Loaded modules: basemod,bugs
Loading required package: fields
Loading required package: spam
Loading required package: dotCall64
Loading required package: grid
Spam version 2.1-1 (2017-07-02) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction 
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.

Attaching package: 'spam'

The following objects are masked from 'package:base':

    backsolve, forwardsolve

Loading required package: maps
Loading required package: poibin

BaySIC documentation built on May 2, 2019, 10:29 a.m.