Description Usage Arguments Value References See Also
Infer probabilities of association between disease label and locus and posterior parameter values under BeviMed model.
1 2 3 4 5 6 7 8 9 10 |
y |
Logical vector of case ( |
G |
Integer matrix of variant counts per individual, one row per individual and one column per variant. |
ploidy |
Integer vector giving ploidy of samples. |
prior_prob_association |
The prior probability of association. |
prior_prob_dominant |
The prior probability of dominant inheritance given that there is an association. |
dominant_args |
Arguments to pass to |
recessive_args |
Arguments to pass to |
... |
Arguments to be passed to |
BeviMed
object containing results of inference.
Greene et al., A Fast Association Test for Identifying Pathogenic Variants Involved in Rare Diseases, The American Journal of Human Genetics (2017), http://dx.doi.org/10.1016/j.ajhg.2017.05.015.
prob_association
, bevimed_m
, summary.BeviMed
, bevimed_polytomous
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