prob_pathogenic: Calculate variant marginal probabilities of pathogencity
In BeviMed: Bayesian Evaluation of Variant Involvement in Mendelian Disease
Description
Usage
Arguments
Value
See Also
Description
Calls bevimed and extract_prob_pathogenic to obtain marginal probabilities of pathogenicity.
Usage
1
prob_pathogenic(by_model = FALSE, ...)
Arguments
by_model
Logical value determining whether to return probabilities broken down by mode of inheritance.
...
Arguments to pass to bevimed.
Value
If by_model is FALSE, a vector of probabilities of pathogenicity for each variant, otherwise a list of vectors of probabilities of pathogenicity conditional on each compared association model.
See Also
extract_prob_pathogenic, bevimed
BeviMed documentation built on Feb. 1, 2021, 1:06 a.m.
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Description Usage Arguments Value See Also
Description
Calls bevimed and extract_prob_pathogenic to obtain marginal probabilities of pathogenicity.
Usage
1 | prob_pathogenic(by_model = FALSE, ...)
|
Arguments
by_model |
Logical value determining whether to return probabilities broken down by mode of inheritance. |
... |
Arguments to pass to |
Value
If by_model is FALSE, a vector of probabilities of pathogenicity for each variant, otherwise a list of vectors of probabilities of pathogenicity conditional on each compared association model.
See Also
extract_prob_pathogenic, bevimed
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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