bdImpute_snps_hdf5: Impute SNPs in hdf5 omic dataset

In BigDataStatMeth: Statistical Methods and Algorithms for Big Data

Impute SNPs in hdf5 omic dataset

Description

Impute SNPs in hdf5 omic dataset

Usage

bdImpute_snps_hdf5(
  filename,
  group,
  dataset,
  outgroup = NULL,
  outdataset = NULL,
  bycols = TRUE
)

Arguments

filename,	character array indicating the name of the file to create
group,	character array indicating the input group where the data set to be imputed is.
dataset,	character array indicating the input dataset to be imputed
outgroup,	optional character array indicating group where the data set will be saved after imputation if 'outgroup' is NULL, output dataset is stored in the same input group.
outdataset,	optional character array indicating dataset to store the resulting data after imputation if 'outdataset' is NULL, input dataset will be overwritten.
bycols,	boolean by default = true, true indicates that the imputation will be done by columns, otherwise, the imputation will be done by rows

Value

Original hdf5 data file with imputed data

BigDataStatMeth documentation built on March 30, 2022, 1:07 a.m.