Man pages for BiodiversityR
Package for Community Ecology and Suitability Analysis
| accumresult | Alternative Species Accumulation Curve Results |
| add.spec.scores | Add Species Scores to Unconstrained Ordination Results |
| balanced.specaccum | Balanced Species Accumulation Curves |
| BCI.env | Barro Colorado Island Quadrat Descriptions |
| BiodiversityR.changeLog | changeLog file for BiodiversityR |
| BiodiversityRGUI | GUI for Biodiversity, Community Ecology and Ensemble... |
| BiodiversityR-package | GUI for biodiversity, suitability and community ecology... |
| CAPdiscrim | Canonical Analysis of Principal Coordinates based on... |
| caprescale | Rescaling of Capscale Results to Reflect Total Sums of... |
| crosstabanalysis | Presence-absence Analysis by Cross Tabulation |
| CucurbitaClim | Baseline and Future WorldClim 2.1 Climatic Data for Cucurbita... |
| deviancepercentage | Calculate Percentage and Significance of Deviance Explained... |
| distdisplayed | Compare Distance Displayed in Ordination Diagram with... |
| dist.eval | Distance Matrix Evaluation |
| disttransform | Community Matrix Transformation |
| dist.zeroes | Distance Matrix Transformation |
| diversityresult | Alternative Diversity Results |
| ensemble | Suitability mapping based on ensembles of modelling... |
| ensemble.analogue | Climate analogues from climatic distance raster layers. |
| ensemble.batch | Suitability mapping based on ensembles of modelling... |
| ensemble.bioclim | Suitability mapping based on the BIOCLIM algorithm |
| ensemble.bioclim.graph | Graphs of bioclimatic ranges of species and climates |
| ensemble.blockCV | Spatially or environmentally separated folds for... |
| ensemble.concave | Analysis of Niche Overlap in Environmental Space for Changed... |
| ensemble.dummy.variables | Suitability mapping based on ensembles of modelling... |
| ensemble.ecocrop | Suitability mapping via absolute and optimal precipitation... |
| ensemble.envirem | Calculate bioclimatic variables via the 'envirem' package for... |
| ensemble.evaluate | Model evaluation including True Skill Statistic (TSS),... |
| ensemble.novel | Mapping of novel environmental conditions (areas where some... |
| ensemble.PET.season | Calculate the balance between precipitation and potential... |
| ensemble.PET.seasons | Raster calculations of beginnings and lengths of growing... |
| ensemble.raster | Suitability mapping based on ensembles of modelling... |
| ensemble.red | Area of Occupancy (AOO) and Extent of Occurrence (EOO) via... |
| ensemble.spatialThin | Thinning of presence point coordinates in geographical or... |
| ensemble.terra | Suitability mapping based on ensembles of modelling... |
| ensemble.zones | Mapping of environmental zones based on the Mahalanobis... |
| evaluation.strip | Evaluation strips for ensemble suitability mapping |
| faramea | Faramea occidentalis abundance in Panama |
| ifri | Example data from the International Forestry Resources and... |
| importancevalue | Importance Value |
| loaded.citations | Give Citation Information for all Loaded Packages |
| makecommunitydataset | Make a Community Dataset from a Stacked Dataset |
| multiconstrained | Pairwise Comparisons for All Levels of a Categorical Variable... |
| nested.anova.dbrda | Nested Analysis of Variance via Distance-based Redundancy... |
| NMSrandom | Calculate the NMS Result with the Smallest Stress from... |
| nnetrandom | Calculate the NNET Result with the Smallest Value from... |
| ordicoeno | Coenoclines for an Ordination Axis |
| ordisymbol | Add Other Graphical Items to Ordination Diagrams |
| PCAsignificance | PCA Significance |
| radfitresult | Alternative Rank Abundance Fitting Results |
| rankabundance | Rank Abundance Curves |
| removeNAcomm | Synchronize Community and Environmental Datasets |
| renyiresult | Alternative Renyi Diversity Results |
| sites.long | Helper Functions to Prepare Plotting of Accumulation,... |
| spatialsample | Spatial Sampling within a Polygon |
| transfgradient | Gradient for Hypothetical Example of Turover of Species... |
| transfspecies | Hypothetical Example of Turover of Species Composition |
| treegoer | Calculate climate scores with the Tree Globally Observed... |
| warcom | Warburgia ugandensis AFLP Scores |
| warenv | Warburgia ugandensis Population Structure |
