BP_LnLCompactness: Estimation of the likelihood of a bone section

In BoneProfileR: Tools to Study Bone Compactness

Estimation of the likelihood of a bone section

Description

Estimation of the compactness of a bone section.

Usage

BP_LnLCompactness(
  par,
  bone = NULL,
  data_m = NULL,
  data_nm = NULL,
  distance.center = NULL,
  fixed.parameters = NULL,
  analysis = 1
)

Arguments

par	Parameters of the model
bone	The bone image to be used
data_m	Number of mineralized pixels
data_nm	Number of non-mineralized pixels
distance.center	Distances to the center
fixed.parameters	Fixed parameters of the model
analysis	Name or rank of analysis

Details

BP_LnLCompactness estimates likelihood of model of a bone section

Value

The -Ln L

Author(s)

Marc Girondot [e-mail]

See Also

Other BoneProfileR: BP_AutoFit(), BP_ChooseBackground(), BP_ChooseCenter(), BP_ChooseForeground(), BP_DetectBackground(), BP_DetectCenters(), BP_DetectForeground(), BP_DuplicateAnalysis(), BP_EstimateCompactness(), BP_FitBayesianCompactness(), BP_FitMLCompactness(), BP_FitMLRadialCompactness(), BP_GetFittedParameters(), BP_ListAnalyses(), BP_OpenImage(), BP_Report(), Erinaceus_europaeus, plot.BoneProfileR(), summary.BoneProfileR()

Examples

## Not run: 
# Not run:
path_Hedgehog <- system.file("extdata", "Erinaceus_europaeus_fem_2-1_small.png", 
                             package = "BoneProfileR")
 bone <- BP_OpenImage(file=path_Hedgehog)
 bone <- BP_DetectBackground(bone=bone)
 bone <- BP_DetectForeground(bone=bone)
 bone <- BP_DetectCenters(bone=bone)
 bone <- BP_EstimateCompactness(bone)
 plot(bone)

## End(Not run)

BoneProfileR documentation built on Sept. 11, 2024, 6:07 p.m.