CLONETv2: Clonality Estimates in Tumor

Analyze data from next-generation sequencing experiments on genomic samples. 'CLONETv2' offers a set of functions to compute allele specific copy number and clonality from segmented data and SNPs position pileup. The package has also calculated the clonality of single nucleotide variants given read counts at mutated positions. The package has been developed at the laboratory of Computational and Functional Oncology, Department of CIBIO, University of Trento (Italy), under the supervision of prof Francesca Demichelis. References: Prandi et al. (2014) <doi:10.1186/s13059-014-0439-6>; Carreira et al. (2014) <doi:10.1126/scitranslmed.3009448>.

Package details

AuthorDavide Prandi [aut, cre], Alessandro Romanel [ctb], Tarcisio Fedrizzi [ctb]
MaintainerDavide Prandi <[email protected]>
LicenseMIT + file LICENSE
Version2.1.0
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("CLONETv2")

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CLONETv2 documentation built on May 20, 2019, 5:02 p.m.