API for CLONETv2
Clonality Estimates in Tumor

Global functions
BetaDistr Source code
BetaDistrMonotone Source code
CLONETv2-package Man page
addErrorToBetaTable Source code
adm_table_toy Man page
allele_specific_cna_table_toy Man page
bt_toy Man page
check_ploidy_and_admixture Man page Source code
computeAllelicImbalance Source code
computeBeta Source code
computeMinDistanceFromExpected Source code
computeObservedRMSE Source code
computeRMSE Source code
computeSNVclonality Source code
compute_allele_specific_scna_table Man page Source code
compute_beta_table Man page Source code
compute_clonality Source code
compute_dna_admixture Man page Source code
compute_ploidy Man page Source code
compute_scna_clonality_table Man page Source code
compute_snv_clonality Man page Source code
error_table Man page
extendBetaTableWithCopyNumbers Source code
extend_SNVt_with_bt Source code
findOptimumPloidy Source code
fromListToDF Source code
from_BetaLogR_to_cnAB Source code
getAdmGlobal.2D Source code
getClonalityWithError Source code
getPossibleCnComb Source code Source code
getSegmentsPos Source code
getValsfromPDF Source code
perturbData Source code
perturbDataDF Source code
pileup_normal_toy Man page
pileup_tumor_toy Man page
pl_table_toy Man page
scna_clonality_table_toy Man page
seg_tb_toy Man page
setBetween0and1 Source code
snv_clonality_table_toy Man page
snv_reads_toy Man page
CLONETv2 documentation built on May 20, 2019, 5:02 p.m.