API for CLONETv2
Clonality Estimates in Tumor
| Global functions | |
|---|---|
| BetaDistr | Source code |
| BetaDistrMonotone | Source code |
| CLONETv2-package | Man page |
| addErrorToBetaTable | Source code |
| adm_table_toy | Man page |
| allele_specific_cna_table_toy | Man page |
| bt_toy | Man page |
| check_ploidy_and_admixture | Man page Source code |
| computeAllelicImbalance | Source code |
| computeBeta | Source code |
| computeMinDistanceFromExpected | Source code |
| computeObservedRMSE | Source code |
| computeRMSE | Source code |
| computeSNVclonality | Source code |
| compute_allele_specific_scna_table | Man page Source code |
| compute_beta_table | Man page Source code |
| compute_clonality | Source code |
| compute_dna_admixture | Man page Source code |
| compute_ploidy | Man page Source code |
| compute_scna_clonality_table | Man page Source code |
| compute_snv_clonality | Man page Source code |
| error_table | Man page |
| extendBetaTableWithCopyNumbers | Source code |
| extend_SNVt_with_bt | Source code |
| findOptimumPloidy | Source code |
| fromListToDF | Source code |
| from_BetaLogR_to_cnAB | Source code |
| getAdmGlobal.2D | Source code |
| getClonalityWithError | Source code |
| getPossibleCnComb | Source code Source code |
| getSegmentsPos | Source code |
| getValsfromPDF | Source code |
| perturbData | Source code |
| perturbDataDF | Source code |
| pileup_normal_toy | Man page |
| pileup_tumor_toy | Man page |
| pl_table_toy | Man page |
| scna_clonality_table_toy | Man page |
| seg_tb_toy | Man page |
| setBetween0and1 | Source code |
| snv_clonality_table_toy | Man page |
| snv_reads_toy | Man page |
