Man pages for CLONETv2
Clonality Estimates in Tumor
| adm_table_toy | Toy example of admixture table. |
| allele_specific_cna_table_toy | Toy example of allele specific table of somatic copy number. |
| bt_toy | Toy example of beta table. |
| check_ploidy_and_admixture | Function to compute ploidy from a beta table. |
| CLONETv2-package | CLONETv2 |
| compute_allele_specific_scna_table | Function to compute allele specific somatic copy number |
| compute_beta_table | Function to compute beta table |
| compute_dna_admixture | Function to compute DNA admixture of a tumor sample from the... |
| compute_ploidy | Function to compute ploidy from a beta table. |
| compute_scna_clonality_table | Function to compute clonality of somatic copy number data |
| compute_snv_clonality | Function to compute clonality of SNVs |
| error_table | Beta estimation error. |
| pileup_normal_toy | Toy example of normal pileup data. |
| pileup_tumor_toy | Toy example of tumor pileup data. |
| pl_table_toy | Toy example of ploidy table. |
| scna_clonality_table_toy | Toy example of clonality table of somatic copy number. |
| seg_tb_toy | Toy example of segmetd data. |
| snv_clonality_table_toy | Toy example of snv clonality table. |
| snv_reads_toy | Toy example of snv data. |
