| carsonella | CNV experiment of C. Carsonella ruddy (artificial data) | 
| CNOGpro | Set up a new CNOGpro experiment | 
| CNOGpro-internal | Internal CNOGpro Functions | 
| CNOGpro-package | CNOGpro - Copy Numbers of Genes in Prokaryotes | 
| normalizeGC | Normalization of read count data by GC content | 
| plotCNOGpro | Plots the results of a 'CNOGpro' experiment | 
| printCNOGpro | Prints the results of a 'CNOGpro' experiment | 
| runBootstrap | Gene copy numbers with confidence intervals through... | 
| runHMM | Copy number variation inference through a Hidden Markov Model | 
| store | Store the results of a 'CNOGpro' copy number experiment | 
| summaryCNOGpro | Summarize the 'CNOGpro' experiment | 
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