CNOGpro-package: CNOGpro - Copy Numbers of Genes in Prokaryotes

Description Details Author(s) References


Detects copy number variation in resequencing experiments


Package: CNOGpro
Type: Package
Version: 1.1
Date: 2015-01-12
License: GPL-2

After mapping the reads from a resequencing experiment to a reference organism, CNOGpro allows the user to count coverage of the reference in sliding windows, normalize the counts based on observed GC-bias, and run two main models for inferring copy number variation and breakpoints - One approach using a Hidden Markov Model, and one using bootstrapping. The latter will also produce confidence intervals of the desired range around the observed copy number.


Ola Brynildsrud Maintainer: Ola Brynildsrud <>


Manuscript forthcoming...

CNOGpro documentation built on May 2, 2019, 5:57 a.m.