CNOGpro-package: CNOGpro - Copy Numbers of Genes in Prokaryotes

In CNOGpro: Copy Numbers of Genes in prokaryotes

Description

Detects copy number variation in resequencing experiments

Details

Package:	CNOGpro
Type:	Package
Version:	1.1
Date:	2015-01-12
License:	GPL-2

After mapping the reads from a resequencing experiment to a reference organism, CNOGpro allows the user to count coverage of the reference in sliding windows, normalize the counts based on observed GC-bias, and run two main models for inferring copy number variation and breakpoints - One approach using a Hidden Markov Model, and one using bootstrapping. The latter will also produce confidence intervals of the desired range around the observed copy number.

Author(s)

Ola Brynildsrud Maintainer: Ola Brynildsrud <[e-mail]>

References

Manuscript forthcoming...

CNOGpro documentation built on May 2, 2019, 5:57 a.m.