Detects copy number variation in resequencing experiments
After mapping the reads from a resequencing experiment to a
CNOGpro allows the user to count
coverage of the reference in sliding windows, normalize the
counts based on observed GC-bias, and run two main models for
inferring copy number variation and breakpoints - One approach
using a Hidden Markov Model, and one using bootstrapping. The
latter will also produce confidence intervals of the desired
range around the observed copy number.
Ola Brynildsrud Maintainer: Ola Brynildsrud <email@example.com>
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