store: Store the results of a 'CNOGpro' copy number experiment

In CNOGpro: Copy Numbers of Genes in prokaryotes

Description

Prints the relevant data to a text file. By default, the entire gene table including copy numbers inferred by bootstrapping and HMM is printed. However, using the flag outputEntireTable=F will make the function print only the HMM breakpoints with associated most probable states.

Usage

store(experiment, outputEntireTable = T, path = "./")

Arguments

experiment	An object of class CNOGpro.
outputEntireTable	A logical flag indicating if the entire genes attribute table is to be printed. If set to FALSE, only the HMM table of breakpoints and states will be printed.
path	The path to be written to.

Details

Outputs data to a tab-separated text-file. User must have permission to print to the output directory.

Author(s)

Ola Brynildsrud

Examples

data(carsonella)
## Not run: store(carsonella, path="./")

CNOGpro documentation built on May 2, 2019, 5:57 a.m.