Files in CNVScope
A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization

MD5
NEWS.md
NAMESPACE
DESCRIPTION
LICENSE
R/getInterchromosomalInteractivePlot.R R/freadGDCfile.R R/postProcessLinRegMatrix.R R/runCNVScopeShiny.R R/getAsymmetricBlockIndices.R R/calcCNVKernelProbDist.R R/signedRescale.R R/GRanges_to_underscored_pos.R R/nbl_result_matrix_sign_small.R R/averageMatrixEdges.R R/underscored_pos_to_GRanges.R R/calcVecLMs.R R/mathead.R R/getBlockAverageMatrixFromBreakpoints.R R/getGlobalRescalingStats.R R/formSampleMatrixFromRawGDCData.R R/downsample_genomic_matrix.R R/extractNegLogPval.R R/writeMeltedChromosomalMatrixToDisk.R R/runCNVScopeLocal.R R/importBreakpointBed.R R/createChromosomalMatrixSet.R R/getAnnotationMatrix.R R/CNVScopeserver.R R/writeAsymmetricMeltedMatrixToDisk.R R/rebinGenomicInteractions.R inst/doc/additonal_examples.R inst/doc/create_output_matrix.R inst/doc/create_output_matrix.Rmd inst/doc/power_analysis.Rmd inst/doc/additonal_examples.Rmd
inst/doc/power_analysis.html
inst/doc/create_input_matrix.Rmd
inst/doc/additonal_examples.html
inst/doc/create_input_matrix.html
inst/doc/create_output_matrix.html
inst/doc/power_analysis.R inst/doc/create_input_matrix.R
inst/extdata/grch37.rda
inst/extdata/ensembl_gene_tx_table_prot.rda
inst/extdata/censushg19.rds
inst/extdata/sample_breakpoints_chr1.bed
inst/extdata/sample_breakpoints.bed
inst/extdata/somaticCnvSegmentsDiploidBeta_TARGET-30-PANRVJ_NormalVsPrimary.tsv
inst/extdata/nbl_result_matrix_small.rds
inst/extdata/nbl_result_matrix_sign_small.rda
build/vignette.rds
vignettes/chr11_1e5_nbl.jpg
vignettes/NBL_custom_sample_matched_input_matrix_1e7binsize.rds
vignettes/create_output_matrix.Rmd
vignettes/skcm_sample_matched_input_matrix.rds
vignettes/power_analysis.Rmd
vignettes/NBL_custom_sample_matched_input_matrix_1e8binsize.rds
vignettes/chr11_1e8_nbl.jpg
vignettes/chr17_probdist_blca.png
vignettes/additonal_examples.Rmd
vignettes/aml_sample_matched_input_matrix.rds
vignettes/NBL_custom_sample_matched_input_matrix_1e5binsize_parallel.rds
vignettes/blca_sample_matched_input_matrix.rds
vignettes/create_input_matrix.Rmd
vignettes/chr11_1e6_nbl.jpg
vignettes/NBL_data_files.png
vignettes/nbl_result_matrix_small.rds
vignettes/nbl_slurm_object_test_zero_removed.rds
vignettes/NBL_custom_sample_matched_input_matrix_2.5e5binsize_parallel.rds
vignettes/chr17_contour_blca.png
vignettes/chr11_2.5e5_nbl.jpg
vignettes/download_from_cart.png
vignettes/chr17_corr_diff_blca.png
vignettes/NBL_sample_matched_input_matrix.rds
vignettes/chr11_1e7_nbl.jpg
data/nbl_result_matrix_sign_small.rda
man/averageMatrixEdges.Rd man/runCNVScopeShiny.Rd man/GRanges_to_underscored_pos.Rd man/writeAsymmetricMeltedChromosomalMatrixToDisk.Rd man/getAsymmetricBlockIndices.Rd man/calcVecLMs.Rd man/postProcessLinRegMatrix.Rd man/createChromosomalMatrixSet.Rd man/downsample_genomic_matrix.Rd man/writeMeltedChromosomalMatrixToDisk.Rd man/freadGDCfile.Rd man/calcCNVKernelProbDist.Rd man/nbl_result_matrix_sign_small.Rd man/rebinGenomicInteractions.Rd man/mathead.Rd man/getBlockAverageMatrixFromBreakpoints.Rd man/underscored_pos_to_GRanges.Rd man/importBreakpointBed.Rd man/getInterchromosomalInteractivePlot.Rd man/formSampleMatrixFromRawGDCData.Rd man/extractNegLogPval.Rd man/getGlobalRescalingStats.Rd man/getAnnotationMatrix.Rd man/runCNVScopeLocal.Rd man/signedRescale.Rd man/CNVScopeserver.Rd
CNVScope documentation built on May 24, 2021, 5:07 p.m.